Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   GEV42_RS29550 Genome accession   NZ_CP045552
Coordinates   6246277..6246801 (-) Length   174 a.a.
NCBI ID   WP_003095836.1    Uniprot ID   G3XCX7
Organism   Pseudomonas aeruginosa strain YT12746     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6241277..6251801
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV42_RS29535 (GEV42_30385) aroB 6242393..6243499 (-) 1107 WP_003162482.1 3-dehydroquinate synthase -
  GEV42_RS29540 (GEV42_30390) aroK 6243549..6244067 (-) 519 WP_003095833.1 shikimate kinase AroK -
  GEV42_RS29545 (GEV42_30395) pilQ 6244079..6246223 (-) 2145 WP_034039637.1 type 4a pilus secretin PilQ Machinery gene
  GEV42_RS29550 (GEV42_30400) comL/pilP 6246277..6246801 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  GEV42_RS29555 (GEV42_30405) pilO 6246798..6247421 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  GEV42_RS29560 (GEV42_30410) pilN 6247418..6248014 (-) 597 WP_031671448.1 type 4a pilus biogenesis protein PilN Machinery gene
  GEV42_RS29565 (GEV42_30415) pilM 6248014..6249078 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  GEV42_RS29570 (GEV42_30420) - 6249263..6251734 (+) 2472 WP_003095841.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19053.84 Da        Isoelectric Point: 9.4114

>NTDB_id=345024 GEV42_RS29550 WP_003095836.1 6246277..6246801(-) (comL/pilP) [Pseudomonas aeruginosa strain YT12746]
MRARLILSSLLLASLAGCGGGSDFADLQSYMDEVRARPKGTIEPLPKFQPYEAFTYSAASLRSPFQPPVKIDLTVRQKGN
KVIKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=345024 GEV42_RS29550 WP_003095836.1 6246277..6246801(-) (comL/pilP) [Pseudomonas aeruginosa strain YT12746]
ATGAGAGCCCGCCTGATTCTGAGCAGCCTGCTGCTCGCCAGCCTGGCCGGATGCGGCGGCGGTTCCGATTTCGCCGATCT
GCAGTCCTACATGGACGAGGTTCGCGCCCGGCCCAAGGGCACCATCGAGCCGTTGCCGAAGTTCCAGCCGTACGAGGCCT
TCACCTATAGCGCCGCGTCGCTACGCAGCCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAGGGCAAC
AAGGTGATCAAGCCCGACGAGACGCGGGTCAAGCAGTTCCTGGAAGGCTTCAACATCGAGACCTTCGAGATGGTCGGCAC
TCTGTCCAACGCCCAGGGCACCTTCGCCCTGGTGAAGGGCGCGGGTGGCGTGCACCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGACGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATCGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 2Y4X
  PDB 2Y4Y

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.416

99.425

0.362

Multiple sequence alignment