Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EWA64_RS09395 Genome accession   NZ_CP035921
Coordinates   1829664..1830362 (-) Length   232 a.a.
NCBI ID   WP_061893577.1    Uniprot ID   -
Organism   Vibrio cidicii strain 2423-01     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1824664..1835362
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA64_RS09365 gspL 1824854..1826053 (+) 1200 WP_061893573.1 type II secretion system protein GspL -
  EWA64_RS09370 - 1826061..1826552 (+) 492 WP_039439069.1 type II secretion system protein M -
  EWA64_RS09375 - 1826554..1827315 (+) 762 WP_061893574.1 type II secretion system protein N -
  EWA64_RS09380 cysQ 1827394..1828221 (-) 828 WP_061893575.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EWA64_RS09385 nudE 1828236..1828790 (-) 555 WP_061893576.1 ADP compounds hydrolase NudE -
  EWA64_RS09390 nfuA 1828946..1829530 (-) 585 WP_039422661.1 Fe-S biogenesis protein NfuA -
  EWA64_RS09395 comF 1829664..1830362 (-) 699 WP_061893577.1 amidophosphoribosyltransferase Machinery gene
  EWA64_RS09400 bioH 1830452..1831219 (+) 768 WP_061893578.1 pimeloyl-ACP methyl ester esterase BioH -
  EWA64_RS09405 - 1831360..1831827 (+) 468 WP_061893579.1 hypothetical protein -
  EWA64_RS09410 - 1831906..1834227 (-) 2322 WP_061893580.1 Tex family protein -
  EWA64_RS09415 greB 1834462..1834944 (+) 483 WP_039422669.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 232 a.a.        Molecular weight: 26677.97 Da        Isoelectric Point: 9.1314

>NTDB_id=345001 EWA64_RS09395 WP_061893577.1 1829664..1830362(-) (comF) [Vibrio cidicii strain 2423-01]
MLTHWLREKILRSLPRLCHLCGLPCSPASASLWCDHCLGYFSPTPRCRHCGLPTLSNVAECGQCLRTPPVWRRLYCLSDY
QFPTAWYVNQIKHQRQFRFCQPVATLLAERITEPAPLLLSVPMHWRRQWRRGFNQSDLFAAQLAHALGQHYLPDAFRRTT
HTPPQQGLNKQQRQRNLAGAFRLNRPIEAKHVAIVDDVVTTGSTVRQLCQLLLADGVESIDIYCICRTPEPK

Nucleotide


Download         Length: 699 bp        

>NTDB_id=345001 EWA64_RS09395 WP_061893577.1 1829664..1830362(-) (comF) [Vibrio cidicii strain 2423-01]
ATGTTAACTCATTGGCTGCGTGAAAAAATACTCCGATCACTGCCTAGGCTGTGTCACCTGTGCGGCTTACCCTGTTCACC
TGCCAGCGCCTCTCTGTGGTGTGACCATTGCCTTGGCTATTTTTCGCCTACGCCTCGTTGTCGCCACTGTGGCTTGCCCA
CCTTAAGTAACGTCGCCGAATGCGGCCAATGTCTGCGCACCCCACCCGTTTGGCGACGCTTGTATTGTCTGAGCGATTAC
CAATTTCCTACCGCTTGGTATGTCAATCAGATCAAACACCAGCGCCAATTTCGTTTCTGTCAACCCGTTGCCACGCTCCT
TGCCGAGCGCATTACTGAGCCCGCTCCACTGCTGCTCTCTGTCCCCATGCACTGGCGTCGACAGTGGCGACGTGGTTTTA
ATCAGAGCGACCTTTTCGCCGCACAGTTGGCACACGCCCTTGGCCAGCACTATCTGCCAGACGCCTTTCGCCGCACCACT
CACACGCCACCACAACAAGGGCTCAACAAACAGCAGAGACAGCGCAATCTCGCGGGCGCTTTTCGCTTAAATCGGCCAAT
TGAGGCCAAACACGTGGCGATTGTTGACGATGTTGTCACCACTGGCAGCACAGTGCGACAATTATGCCAATTACTGCTTG
CAGACGGGGTGGAAAGCATTGATATTTATTGTATCTGCCGCACTCCTGAGCCGAAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(139-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

57.328

100

0.573
  comF Vibrio campbellii strain DS40M4

47.479

100

0.487

Multiple sequence alignment