Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   GEV49_RS25100 Genome accession   NZ_CP045547
Coordinates   5638633..5640894 (+) Length   753 a.a.
NCBI ID   WP_153179777.1    Uniprot ID   -
Organism   Streptomyces sp. SYP-A7193     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 5633633..5645894
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GEV49_RS25065 (GEV49_25295) - 5634128..5634922 (-) 795 WP_153179770.1 ArsR/SmtB family transcription factor -
  GEV49_RS25070 (GEV49_25300) - 5635034..5635651 (+) 618 WP_153179771.1 TOPRIM nucleotidyl transferase/hydrolase domain-containing protein -
  GEV49_RS25075 (GEV49_25305) - 5635688..5636341 (+) 654 WP_153179772.1 hypothetical protein -
  GEV49_RS25080 (GEV49_25310) - 5636331..5636768 (-) 438 WP_153179773.1 ATP-binding protein -
  GEV49_RS25085 (GEV49_25315) - 5636987..5637823 (+) 837 WP_153179774.1 helix-turn-helix domain-containing protein -
  GEV49_RS25090 (GEV49_25320) - 5637831..5638028 (+) 198 WP_153179775.1 DUF397 domain-containing protein -
  GEV49_RS25095 (GEV49_25325) - 5637985..5638536 (-) 552 WP_153179776.1 hypothetical protein -
  GEV49_RS25100 (GEV49_25330) recD/recD2/recDB 5638633..5640894 (+) 2262 WP_153179777.1 ATP-dependent RecD-like DNA helicase Machinery gene
  GEV49_RS25105 (GEV49_25335) - 5641133..5642422 (+) 1290 WP_042822308.1 citrate synthase -
  GEV49_RS25110 (GEV49_25340) - 5643077..5643559 (-) 483 WP_153179778.1 hypothetical protein -
  GEV49_RS25115 (GEV49_25345) - 5643611..5644603 (-) 993 WP_228126212.1 LysR family transcriptional regulator -
  GEV49_RS25120 (GEV49_25350) - 5644742..5645590 (+) 849 WP_153179779.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 753 a.a.        Molecular weight: 81502.20 Da        Isoelectric Point: 6.6317

>NTDB_id=344918 GEV49_RS25100 WP_153179777.1 5638633..5640894(+) (recD/recD2/recDB) [Streptomyces sp. SYP-A7193]
MPTQPPAAPGERRLATLEGVLERVTYANEENGYTVARVDTGRGAGDLLTVVGALLGAQVGESLRMEGRWGSHAQYGKQFH
VENYTTLLPATVQGIRRYLGSGLVKGIGPIFADRITQHFGLDTLTIIEEEPKRLIEVPGLGPKRTKKIADAWEEQKAIKE
VMLFLQTVEVSTSIAVRIYKKYGDASISVVKNQPYRLAADVWGIGFLTADKIAQSVGIPHDSPERVKAGMQYALSQATDQ
GHCYLPEEKLIADAVKLLQVDTGLVIECLGELAAEPEDPDGDPGVVREKVPHPEGGEPVTAVYLVPFHRAEQALAGQLRR
LLRTDEDRMPGFQDVAWDKALGWLRQRTGVDLAPEQEEAVKLALSEKVAVLTGGPGCGKSFTVRSIVELARAKKAKVVLA
APTGRAAKRLSELTGADASTVHRLLELKPGGDAAYDRERPLDADLVVVDEASMLDLLLANKLAKAVPPGAHLLLVGDVDQ
LPSVGAGEVLRDLLAPGSPVPAVRLTRVFRQAQQSGVVTNAHRINGGQHPLTDGMKDFFLFVEDDTEEAGRLTVDVAARR
IPAKFGLDPRRDVQVLAPMHRGPAGAGTLNGLLQQAVTPGRPDLPEKRFGGRVFRVGDKVTQIRNNYEKGENGVFNGTVG
VVTSLDPVDQRLTVLTDEDEEVPYDFDELDELAHAYAVTIHRSQGSEYPAVVIPVTTGAWMMLQRNLLYTAVTRAKKLVV
LVGSRKAIGQAVRTVSAGRRCTALDFRLAGPRT

Nucleotide


Download         Length: 2262 bp        

>NTDB_id=344918 GEV49_RS25100 WP_153179777.1 5638633..5640894(+) (recD/recD2/recDB) [Streptomyces sp. SYP-A7193]
ATGCCCACCCAGCCCCCCGCGGCCCCCGGCGAGCGGCGGCTCGCCACCCTCGAAGGCGTCCTGGAGCGCGTCACGTACGC
CAACGAGGAGAACGGCTACACCGTCGCCCGCGTCGACACCGGCAGAGGCGCCGGCGACCTGCTGACCGTCGTCGGCGCGC
TGCTGGGTGCGCAGGTGGGGGAGTCGCTGCGGATGGAGGGGCGCTGGGGGTCGCACGCCCAGTACGGCAAGCAGTTCCAC
GTGGAGAACTACACGACGCTTCTCCCCGCCACCGTGCAGGGCATCCGGCGTTACCTCGGGTCCGGGCTGGTCAAGGGGAT
CGGGCCGATCTTCGCCGACCGGATCACGCAGCACTTCGGGCTCGACACCCTCACGATCATCGAGGAGGAGCCCAAGCGGC
TCATCGAGGTGCCCGGCCTCGGGCCCAAGCGGACCAAGAAGATCGCCGACGCCTGGGAGGAGCAGAAGGCGATCAAGGAG
GTCATGCTGTTCCTCCAGACGGTCGAGGTGTCCACCTCCATCGCCGTGCGGATCTACAAGAAGTACGGGGACGCCTCCAT
CTCCGTCGTGAAGAACCAGCCCTACCGGCTCGCCGCCGACGTCTGGGGCATCGGCTTCCTCACCGCCGACAAGATCGCCC
AGTCCGTCGGGATCCCGCACGACAGCCCCGAGCGGGTCAAGGCCGGGATGCAGTACGCGCTGTCGCAGGCCACCGACCAG
GGGCACTGCTACCTCCCGGAGGAGAAGCTGATCGCCGACGCGGTGAAGCTGCTCCAGGTGGACACCGGGCTCGTCATCGA
GTGCCTGGGCGAGCTGGCCGCCGAGCCCGAGGATCCCGACGGCGACCCCGGTGTCGTGCGGGAGAAGGTGCCCCATCCCG
AGGGCGGCGAGCCCGTCACCGCCGTCTACCTCGTCCCCTTCCACCGTGCCGAGCAGGCCCTCGCCGGACAGCTGCGGCGC
CTGCTCCGCACCGACGAGGACCGGATGCCCGGCTTCCAGGACGTGGCCTGGGACAAGGCGCTCGGGTGGCTGCGGCAGCG
TACGGGCGTCGATCTCGCGCCCGAGCAGGAGGAGGCCGTCAAGCTCGCGCTGAGCGAGAAGGTCGCCGTCCTCACCGGCG
GGCCCGGCTGCGGCAAGTCCTTCACCGTGCGGTCGATCGTGGAGCTGGCGCGGGCGAAGAAGGCCAAGGTTGTGCTCGCC
GCGCCCACCGGGCGGGCCGCCAAGCGGCTCTCCGAGCTGACCGGCGCCGACGCGTCCACCGTGCACCGGCTGCTGGAGCT
GAAGCCGGGCGGCGACGCGGCCTACGACCGGGAGCGGCCGCTCGACGCCGACCTCGTCGTGGTGGACGAGGCGTCGATGC
TGGACCTGCTGCTCGCCAACAAGCTTGCGAAAGCCGTGCCGCCGGGTGCTCATCTGCTCCTCGTCGGGGACGTCGACCAG
TTGCCCAGCGTGGGGGCGGGGGAGGTGCTGAGGGACCTGCTGGCACCCGGCAGCCCGGTCCCCGCCGTCCGTCTCACCCG
CGTCTTCCGGCAGGCCCAGCAGTCCGGCGTCGTCACCAACGCGCACCGGATCAACGGCGGGCAGCATCCGCTCACCGACG
GGATGAAGGACTTCTTCCTCTTCGTCGAGGACGACACCGAGGAGGCGGGGCGGCTCACCGTCGACGTCGCCGCGCGGCGC
ATTCCCGCGAAGTTCGGGCTCGACCCGCGCCGGGACGTGCAGGTGCTGGCGCCCATGCACCGGGGGCCGGCGGGGGCCGG
GACACTGAACGGGCTGCTCCAGCAGGCCGTCACCCCGGGGCGCCCGGACCTGCCGGAGAAGCGGTTCGGCGGCCGGGTCT
TCCGGGTCGGCGACAAGGTCACCCAGATCCGCAACAATTACGAGAAGGGCGAGAACGGCGTCTTCAACGGCACCGTCGGC
GTCGTCACCTCGCTCGACCCGGTCGACCAGCGCCTCACCGTGCTGACGGACGAGGACGAGGAGGTGCCGTACGACTTCGA
CGAGCTGGACGAGCTGGCCCACGCCTATGCGGTGACCATCCACCGGTCCCAGGGGAGCGAGTATCCGGCGGTGGTGATCC
CCGTGACGACCGGCGCCTGGATGATGCTCCAGCGGAACCTGCTGTACACGGCGGTCACCCGGGCGAAGAAGCTGGTCGTG
CTCGTCGGCTCGCGCAAGGCGATCGGGCAGGCGGTGCGGACGGTGTCGGCCGGGCGGCGGTGCACGGCGCTCGACTTCCG
GCTGGCGGGGCCCCGGACCTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(154-244)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-654)

AAA domain (AAA_30)

(352-530)

Helix-hairpin-helix domain (HHH_5)

(104-153)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(674-722)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

35.714

100

0.365