Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   FPL20_RS17275 Genome accession   NZ_CP045478
Coordinates   3285868..3286317 (-) Length   149 a.a.
NCBI ID   WP_003221370.1    Uniprot ID   G4NWT8
Organism   Bacillus subtilis strain JD-014     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 3280868..3291317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FPL20_RS17245 (FPL20_GE03281) sepM 3280947..3281972 (-) 1026 WP_003245451.1 protease DdcP Regulator
  FPL20_RS17250 (FPL20_GE03282) ylbK 3281974..3282756 (-) 783 WP_003232221.1 patatin family protein -
  FPL20_RS17255 (FPL20_GE03283) spoVV 3282937..3284163 (+) 1227 WP_003245492.1 dipicolinic acid transporter SpoVV -
  FPL20_RS17260 (FPL20_GE03284) coaD 3284174..3284659 (-) 486 WP_003245283.1 pantetheine-phosphate adenylyltransferase -
  FPL20_RS17265 (FPL20_GE03285) rsmD 3284664..3285218 (-) 555 WP_003232227.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  FPL20_RS17270 (FPL20_GE03286) ylbG 3285541..3285813 (-) 273 WP_009967171.1 YlbG family protein -
  FPL20_RS17275 (FPL20_GE03287) ylbF 3285868..3286317 (-) 450 WP_003221370.1 regulatory iron-sulfur-containing complex subunit RicF Regulator
  FPL20_RS17280 (FPL20_GE03288) ylbE 3286433..3286672 (-) 240 WP_003232231.1 YlbE-like family protein -
  FPL20_RS17285 (FPL20_GE03289) ylbD 3286688..3287086 (-) 399 WP_003232233.1 YlbD family protein -
  FPL20_RS17290 (FPL20_GE03290) ylbC 3287318..3288358 (-) 1041 WP_003245434.1 CAP domain-containing protein -
  FPL20_RS17295 (FPL20_GE03291) ylbB 3288442..3288888 (-) 447 WP_003221362.1 CBS domain-containing protein -
  FPL20_RS17300 (FPL20_GE03292) ylbA 3289028..3289390 (+) 363 WP_003232238.1 YugN family protein -
  FPL20_RS17305 (FPL20_GE03293) ctaG 3289422..3290315 (-) 894 WP_003244967.1 cytochrome c oxidase assembly factor CtaG -
  FPL20_RS17310 (FPL20_GE03294) ctaF 3290342..3290674 (-) 333 WP_003232242.1 cytochrome c oxidase subunit IVB -
  FPL20_RS17315 (FPL20_GE03295) ctaE 3290677..3291300 (-) 624 WP_003232244.1 cytochrome c oxidase subunit III -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16913.96 Da        Isoelectric Point: 4.9284

>NTDB_id=344747 FPL20_RS17275 WP_003221370.1 3285868..3286317(-) (ylbF) [Bacillus subtilis strain JD-014]
MYATMESVRLQSEAQQLAEMILQSETAENYRNCYKRLQEDEEAGRIIRSFIKIKEQYEDVQRFGKYHPDYREISRKMREI
KRELDLNDKVADFKRAENELQSILDEVSVEIGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGSCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=344747 FPL20_RS17275 WP_003221370.1 3285868..3286317(-) (ylbF) [Bacillus subtilis strain JD-014]
ATGTATGCGACGATGGAATCCGTGCGGCTTCAAAGTGAAGCTCAGCAGCTTGCCGAGATGATTCTGCAGTCGGAGACGGC
TGAGAACTACCGCAATTGTTACAAGCGTCTCCAGGAAGATGAAGAGGCAGGTCGGATTATTCGTTCTTTTATCAAAATAA
AAGAGCAGTATGAGGATGTACAGCGTTTTGGCAAATATCATCCTGACTATAGAGAAATATCCCGGAAAATGAGGGAGATC
AAACGTGAGCTGGACCTGAACGATAAGGTGGCTGACTTCAAGAGAGCTGAAAATGAGCTCCAGTCCATTCTTGATGAGGT
CAGCGTTGAGATTGGGACAGCTGTTTCGGAGCATGTGAAAGTTCCGACTGGGAACCCTTATTTTGACGGTTTGTCTTCAT
GCGGAGGCGGCTGCGGTTCAGGCGGAAGCTGCGGATGTAAAGTGTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NWT8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

100

100

1