Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EPB55_RS10330 Genome accession   NZ_CP035731
Coordinates   2057684..2058394 (-) Length   236 a.a.
NCBI ID   WP_157401902.1    Uniprot ID   -
Organism   Vibrio vulnificus strain 2142-77     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2052684..2063394
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB55_RS10300 gspL 2052869..2054068 (+) 1200 WP_123772664.1 type II secretion system protein GspL -
  EPB55_RS10305 - 2054076..2054567 (+) 492 WP_011078935.1 type II secretion system protein M -
  EPB55_RS10310 - 2054569..2055330 (+) 762 WP_123772665.1 type II secretion system protein N -
  EPB55_RS10315 cysQ 2055457..2056284 (-) 828 WP_123772666.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EPB55_RS10320 nudE 2056299..2056853 (-) 555 WP_013572571.1 ADP compounds hydrolase NudE -
  EPB55_RS10325 nfuA 2056969..2057553 (-) 585 WP_026050270.1 Fe-S biogenesis protein NfuA -
  EPB55_RS10330 comF 2057684..2058394 (-) 711 WP_157401902.1 ComF family protein Machinery gene
  EPB55_RS10335 bioH 2058483..2059250 (+) 768 WP_110096948.1 pimeloyl-ACP methyl ester esterase BioH -
  EPB55_RS10340 - 2059388..2059858 (+) 471 WP_011078928.1 hypothetical protein -
  EPB55_RS10345 - 2059941..2062265 (-) 2325 WP_123772668.1 Tex family protein -
  EPB55_RS10350 greB 2062501..2062983 (+) 483 WP_013572566.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 236 a.a.        Molecular weight: 27215.98 Da        Isoelectric Point: 9.6643

>NTDB_id=344125 EPB55_RS10330 WP_157401902.1 2057684..2058394(-) (comF) [Vibrio vulnificus strain 2142-77]
MLTDWLSEKILRSLPHLCHLCGLPMNHDHHPLWCLHCLTLFDAEPRCQRCGLPTLTVVPQCGQCLKSPPPWQRLYCLTPY
RFPASHYVNQIKHQRKFWYCASLAPLLIQRIDRPAPLLLSVPMHWRRQWLRGFNQSDVLAAQLARRLNRPFLAHAFTRLL
HTPPQQGLNKQQRQRNLAGAFRLNRSALPHAIPKHVAIVDDVVTTGSTVRQLCQLLLAVGVESIDIYCLCRTPEKD

Nucleotide


Download         Length: 711 bp        

>NTDB_id=344125 EPB55_RS10330 WP_157401902.1 2057684..2058394(-) (comF) [Vibrio vulnificus strain 2142-77]
ATGTTAACCGATTGGCTTAGTGAAAAAATACTCCGATCTCTTCCTCACCTCTGTCATCTGTGCGGCTTGCCGATGAATCA
CGACCATCACCCGCTTTGGTGCCTGCACTGCCTAACCCTGTTCGATGCCGAACCGCGTTGCCAACGTTGCGGGCTGCCGA
CGTTAACGGTTGTCCCCCAGTGCGGCCAATGCCTGAAATCTCCGCCCCCTTGGCAAAGGCTCTACTGCCTCACGCCCTAT
CGCTTCCCGGCCTCACACTACGTCAATCAGATCAAACATCAGCGCAAGTTCTGGTACTGCGCCAGCTTGGCTCCTTTGCT
CATCCAACGCATTGATCGCCCCGCGCCACTGCTGCTCTCTGTGCCGATGCATTGGCGTCGGCAATGGTTACGAGGCTTCA
ATCAAAGCGATGTGTTGGCGGCGCAACTGGCCCGGAGATTAAATCGCCCCTTCCTTGCTCACGCGTTTACTCGTTTGTTG
CACACTCCGCCACAGCAAGGGCTCAATAAACAGCAGCGTCAGCGCAACTTAGCGGGTGCTTTTCGCCTCAATCGCTCGGC
TCTGCCCCATGCGATTCCCAAGCACGTCGCGATTGTCGATGATGTGGTCACGACGGGCAGTACAGTACGACAATTATGTC
AATTACTGCTTGCAGTCGGCGTGGAAAGCATTGATATTTATTGCCTCTGCCGAACTCCCGAGAAGGATTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-235)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

56.41

99.153

0.559
  comF Vibrio campbellii strain DS40M4

46.667

100

0.475

Multiple sequence alignment