Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EPB57_RS17040 Genome accession   NZ_CP035700
Coordinates   1890674..1891399 (+) Length   241 a.a.
NCBI ID   WP_033905914.1    Uniprot ID   -
Organism   Vibrio alginolyticus strain 2013V-1302     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1885674..1896399
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB57_RS17025 - 1886807..1889128 (+) 2322 WP_154204914.1 Tex family protein -
  EPB57_RS17030 - 1889233..1889697 (-) 465 WP_005379316.1 hypothetical protein -
  EPB57_RS17035 bioH 1889822..1890589 (-) 768 WP_005384724.1 pimeloyl-ACP methyl ester esterase BioH -
  EPB57_RS17040 comF 1890674..1891399 (+) 726 WP_033905914.1 amidophosphoribosyltransferase Machinery gene
  EPB57_RS17045 nfuA 1891497..1892081 (+) 585 WP_005379313.1 Fe-S biogenesis protein NfuA -
  EPB57_RS17050 nudE 1892258..1892827 (+) 570 WP_005379309.1 ADP compounds hydrolase NudE -
  EPB57_RS17055 cysQ 1892872..1893699 (+) 828 WP_005379308.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EPB57_RS17060 - 1894003..1894764 (-) 762 WP_062730773.1 type II secretion system protein N -
  EPB57_RS17065 - 1894766..1895257 (-) 492 WP_005383002.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27823.08 Da        Isoelectric Point: 9.7698

>NTDB_id=343914 EPB57_RS17040 WP_033905914.1 1890674..1891399(+) (comF) [Vibrio alginolyticus strain 2013V-1302]
MLSHHWQNIMHRVLSSQCGLCRFPIQTPSHTNTLRWCEHCLKYLTPVKRCQRCGLSLQKEEMSTDSICGECLSKPPPWQR
LYTLGDYDFPLSREVQRFKDHGESWHVKALTEQLAQRITTPAPIITSVPLHWQRYLRRGFNQSDVLARHLAKQLQTNFDA
KVFRRVRLAQSQRGNTKTSREQNLKGAFILNKRPHSSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPRS
L

Nucleotide


Download         Length: 726 bp        

>NTDB_id=343914 EPB57_RS17040 WP_033905914.1 1890674..1891399(+) (comF) [Vibrio alginolyticus strain 2013V-1302]
ATGTTATCTCATCACTGGCAAAACATCATGCATCGCGTATTGAGCAGTCAATGCGGCCTGTGTCGGTTCCCTATTCAAAC
ACCAAGCCACACAAATACTCTGCGCTGGTGCGAGCACTGTTTAAAATACCTAACTCCGGTAAAACGATGTCAACGCTGCG
GTTTATCATTACAGAAAGAAGAAATGAGTACGGATAGTATTTGTGGTGAATGTCTTTCAAAGCCACCGCCATGGCAAAGG
CTATACACGTTAGGCGATTACGACTTTCCCCTTTCACGGGAAGTACAACGCTTTAAAGATCACGGAGAGTCTTGGCATGT
AAAAGCATTAACCGAGCAACTGGCACAGCGCATCACCACGCCAGCTCCAATCATTACCAGTGTGCCATTGCACTGGCAGC
GTTACCTGCGCCGGGGTTTTAATCAAAGTGATGTTTTAGCCCGACACCTCGCCAAGCAATTGCAGACTAATTTTGATGCG
AAGGTCTTTCGTCGAGTAAGGCTCGCCCAATCACAGCGTGGTAATACCAAAACAAGCCGTGAACAAAACTTAAAAGGCGC
GTTTATTCTCAATAAGCGCCCTCACTCTTCCCATGTTGCCATCGTCGATGATGTAGTCACCACAGGCAGTACCGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACACCTGCTCCTCGTTCT
CTCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

70.954

100

0.71
  comF Vibrio cholerae strain A1552

47.917

99.585

0.477

Multiple sequence alignment