Detailed information    

insolico Bioinformatically predicted

Overview

Name   endA   Type   Machinery gene
Locus tag   SDEG_RS03635 Genome accession   NC_012891
Coordinates   708160..709026 (+) Length   288 a.a.
NCBI ID   WP_003057428.1    Uniprot ID   A0AAE6NAQ1
Organism   Streptococcus dysgalactiae subsp. equisimilis GGS_124     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 703160..714026
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SDEG_RS03610 (SDEG_0729) atpD 704196..705602 (+) 1407 WP_012766779.1 F0F1 ATP synthase subunit beta -
  SDEG_RS03615 (SDEG_0730) - 705615..706031 (+) 417 WP_002985233.1 F0F1 ATP synthase subunit epsilon -
  SDEG_RS03620 - 706360..706596 (+) 237 WP_274047614.1 DUF1146 family protein -
  SDEG_RS03625 (SDEG_0731) murA 706661..707932 (+) 1272 WP_012766780.1 UDP-N-acetylglucosamine 1-carboxyvinyltransferase -
  SDEG_RS03630 - 707936..708124 (+) 189 WP_003057490.1 DNA-directed RNA polymerase subunit beta -
  SDEG_RS03635 (SDEG_0732) endA 708160..709026 (+) 867 WP_003057428.1 DNA/RNA non-specific endonuclease Machinery gene
  SDEG_RS03640 (SDEG_0733) pheS 709309..710352 (+) 1044 WP_012766781.1 phenylalanine--tRNA ligase subunit alpha -
  SDEG_RS03645 (SDEG_0734) pheT 710562..712967 (+) 2406 WP_041788915.1 phenylalanine--tRNA ligase subunit beta -
  SDEG_RS03650 (SDEG_0735) - 713077..713454 (+) 378 WP_002993028.1 OsmC family protein -
  SDEG_RS03655 - 713507..713832 (+) 326 Protein_681 DUF1722 domain-containing protein -

Sequence

Protein


Download         Length: 288 a.a.        Molecular weight: 31917.94 Da        Isoelectric Point: 10.0750

>NTDB_id=34388 SDEG_RS03635 WP_003057428.1 708160..709026(+) (endA) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
MLTRKKRKRVLNSFLLILLVLGSSYLAKSDFIASNHPIKQIYRTVLGDKGESSSESKEVYSEVPTEALSASVLTKSIKEQ
LGSDIEWNGAGAYIINRNKTDLNASVASLPYANNETKWVQGQKVPTRANALLTKSTRQYRNRYQTDNAYRTFKPAGWHQL
HHLKGNYDHAVDRGHLLGYALVGGLKGFDASTSNPDNIATQLSWANQADKPYSTGQNYYEGLVRRALDKGKRVRYRVTLL
YDGDNLLASGSQLEAKSADGSLAFNVFVPNVQAGLTVDYRTGQIAINP

Nucleotide


Download         Length: 867 bp        

>NTDB_id=34388 SDEG_RS03635 WP_003057428.1 708160..709026(+) (endA) [Streptococcus dysgalactiae subsp. equisimilis GGS_124]
ATGTTAACAAGGAAAAAACGAAAAAGGGTGCTTAATTCCTTCTTATTGATTTTGTTAGTGTTGGGGTCTAGTTACCTTGC
TAAGAGTGATTTCATAGCTAGCAATCATCCTATTAAGCAAATTTATCGTACCGTTTTGGGAGATAAGGGTGAATCATCAT
CAGAATCAAAAGAAGTCTATAGTGAGGTTCCCACAGAAGCCCTATCCGCTTCTGTCTTGACCAAATCCATTAAGGAACAA
TTAGGTTCCGATATTGAATGGAATGGAGCAGGCGCCTATATTATCAACAGGAACAAAACAGATTTAAACGCAAGCGTAGC
CAGTCTGCCCTATGCCAATAATGAAACCAAATGGGTCCAAGGACAAAAGGTTCCTACTAGAGCTAATGCCTTACTTACTA
AGTCGACACGACAGTATCGAAATCGCTATCAAACGGACAATGCTTATCGTACCTTCAAGCCTGCTGGTTGGCACCAATTA
CATCACTTAAAAGGAAATTATGACCACGCAGTTGATAGAGGACATTTGCTAGGTTATGCTTTAGTCGGTGGACTGAAAGG
TTTTGATGCATCTACCAGTAATCCTGATAACATTGCTACTCAACTAAGTTGGGCCAATCAAGCAGATAAACCCTATTCGA
CAGGTCAAAATTACTATGAAGGATTAGTACGTCGTGCATTGGATAAGGGCAAAAGGGTACGTTATCGTGTTACCTTGCTT
TATGATGGTGATAACCTGTTAGCCAGTGGTAGCCAGTTAGAGGCCAAATCTGCCGATGGGAGTTTAGCATTTAACGTGTT
TGTTCCAAATGTTCAAGCAGGGCTGACGGTTGATTATCGAACAGGACAGATTGCCATCAATCCCTAG

Domains

Predicted by InterproScan.

DNA/RNA non-specific endonuclease (Endonuclease_NS)

(121-246)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  endA Streptococcus pneumoniae Rx1

62.338

80.208

0.5
  endA Streptococcus pneumoniae D39

62.338

80.208

0.5
  endA Streptococcus pneumoniae R6

62.338

80.208

0.5
  endA Streptococcus pneumoniae TIGR4

62.338

80.208

0.5

Multiple sequence alignment