Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ET948_RS05050 Genome accession   NZ_CP035697
Coordinates   1079387..1080112 (-) Length   241 a.a.
NCBI ID   WP_078927153.1    Uniprot ID   -
Organism   Vibrio cincinnatiensis strain 2409-02     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1074387..1085112
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET948_RS05020 gspL 1074710..1075939 (+) 1230 WP_195707294.1 type II secretion system protein GspL -
  ET948_RS05025 - 1075936..1076430 (+) 495 WP_154115151.1 type II secretion system protein M -
  ET948_RS05030 - 1076432..1077190 (+) 759 WP_154115152.1 type II secretion system protein N -
  ET948_RS05035 cysQ 1077219..1078046 (-) 828 WP_154115153.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ET948_RS05040 nudE 1078055..1078618 (-) 564 WP_078927155.1 ADP compounds hydrolase NudE -
  ET948_RS05045 nfuA 1078724..1079311 (-) 588 WP_078927154.1 Fe-S biogenesis protein NfuA -
  ET948_RS05050 comF 1079387..1080112 (-) 726 WP_078927153.1 ComF family protein Machinery gene
  ET948_RS05055 bioH 1080199..1080981 (+) 783 WP_154115877.1 pimeloyl-ACP methyl ester esterase BioH -
  ET948_RS05060 - 1081099..1081569 (+) 471 WP_078927151.1 ATP-dependent Lon protease -
  ET948_RS05065 - 1081665..1083974 (-) 2310 WP_154115154.1 Tex family protein -
  ET948_RS05070 - 1084059..1084676 (-) 618 WP_154115155.1 hypothetical protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27561.94 Da        Isoelectric Point: 8.8059

>NTDB_id=343867 ET948_RS05050 WP_078927153.1 1079387..1080112(-) (comF) [Vibrio cincinnatiensis strain 2409-02]
MPPYFIASLKKISTWLAPACTLCHLPLDHQAQYGVCSACQSWFSPIQRCPRCGLPSVTATDVCGHCLHSSPPWQRLFCIG
DYQFPLSHTIHQFKYQRQFWQARHLAARLAQQIQHPAPLITSVPLHWRRQWYRGFNQSELLAQGLAKQLGCHFSPTIFAR
RLATPAQQSLTKQQREHNLKAAFQIKQLPEHSHIAIVDDVVTTGSTMRQLCYLLLEVGIERIDIYCLCRTPEPSDPLIPR
S

Nucleotide


Download         Length: 726 bp        

>NTDB_id=343867 ET948_RS05050 WP_078927153.1 1079387..1080112(-) (comF) [Vibrio cincinnatiensis strain 2409-02]
ATGCCCCCTTATTTTATCGCTTCTCTTAAGAAAATAAGCACTTGGTTAGCTCCAGCCTGTACTTTATGTCACCTTCCTTT
AGATCATCAAGCGCAATATGGTGTCTGCTCCGCTTGCCAATCTTGGTTTTCTCCCATCCAGCGCTGCCCACGCTGTGGAC
TTCCCAGTGTAACCGCCACTGATGTATGCGGCCACTGTTTACACTCTTCCCCTCCTTGGCAGCGTCTCTTTTGCATTGGT
GACTATCAATTTCCGCTCAGCCACACCATTCACCAATTCAAATATCAACGCCAATTCTGGCAAGCACGTCACCTCGCCGC
CCGCCTTGCTCAGCAAATACAACACCCCGCCCCTTTAATCACCTCTGTTCCGCTTCACTGGCGCCGCCAATGGTACAGAG
GCTTTAATCAAAGTGAGTTATTAGCGCAAGGATTAGCAAAGCAACTCGGCTGTCATTTTTCCCCAACGATCTTTGCGCGT
CGGTTGGCAACACCCGCCCAACAATCATTGACCAAGCAACAACGAGAACATAATTTAAAAGCCGCATTTCAGATTAAACA
GCTTCCTGAACATTCACATATTGCGATTGTCGATGATGTAGTCACCACAGGCAGTACTATGCGACAATTATGCTATTTAC
TACTTGAAGTCGGCATCGAAAGGATTGATATTTACTGTCTATGCCGCACTCCTGAGCCGAGCGATCCCTTAATACCTCGA
TCATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(140-232)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

60.177

93.776

0.564
  comF Vibrio campbellii strain DS40M4

46.903

93.776

0.44

Multiple sequence alignment