Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EPB61_RS12815 Genome accession   NZ_CP035696
Coordinates   1136474..1137175 (+) Length   233 a.a.
NCBI ID   WP_055465863.1    Uniprot ID   A0A0Q2Y1P3
Organism   Vibrio furnissii strain 2419-04     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1131474..1142175
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB61_RS12795 - 1131908..1132570 (+) 663 WP_004728474.1 hypothetical protein -
  EPB61_RS12800 - 1132626..1134935 (+) 2310 WP_154180480.1 Tex family protein -
  EPB61_RS12805 - 1135018..1135488 (-) 471 WP_004728470.1 hypothetical protein -
  EPB61_RS12810 bioH 1135617..1136387 (-) 771 WP_154181308.1 pimeloyl-ACP methyl ester esterase BioH -
  EPB61_RS12815 comF 1136474..1137175 (+) 702 WP_055465863.1 amidophosphoribosyltransferase Machinery gene
  EPB61_RS12820 nfuA 1137276..1137863 (+) 588 WP_038152592.1 Fe-S biogenesis protein NfuA -
  EPB61_RS12825 nudE 1138009..1138557 (+) 549 WP_004728462.1 ADP compounds hydrolase NudE -
  EPB61_RS12830 cysQ 1138581..1139408 (+) 828 WP_004728460.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EPB61_RS12835 - 1139469..1140227 (-) 759 WP_154180481.1 type II secretion system protein N -
  EPB61_RS12840 - 1140224..1140733 (-) 510 WP_004728457.1 type II secretion system protein GspM -
  EPB61_RS12845 gspL 1140743..1141954 (-) 1212 WP_154180482.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 233 a.a.        Molecular weight: 26280.57 Da        Isoelectric Point: 8.8163

>NTDB_id=343825 EPB61_RS12815 WP_055465863.1 1136474..1137175(+) (comF) [Vibrio furnissii strain 2419-04]
MLTNRFQKTMFSWLAPACQLCGLALHAPTKPRLCAACLAWYAPTPRCARCGLPCESATAQCGQCLSTPPPWHQLVCVGDY
RFPLSHSVHQLKYQRQFWQARPLAALLAPRITTPAPLLTCVPLHWRRQLRRGFNQSDVLARQLAQHLGCEYDPQLFSRPH
ATVPQHGLDKAQRRRNLNRAFVLNHEPCQQHVAIVDDVVTTGSTVRQLCNLLLEVGVKSLDIYCICRTPEPSD

Nucleotide


Download         Length: 702 bp        

>NTDB_id=343825 EPB61_RS12815 WP_055465863.1 1136474..1137175(+) (comF) [Vibrio furnissii strain 2419-04]
ATGTTAACCAATCGCTTTCAAAAAACCATGTTTTCCTGGCTGGCGCCCGCCTGCCAACTGTGCGGCTTAGCGCTACACGC
GCCGACCAAACCCAGGCTGTGTGCGGCATGTCTGGCGTGGTATGCCCCCACACCGCGCTGCGCTCGCTGCGGCCTGCCGT
GCGAAAGTGCCACCGCGCAGTGCGGCCAATGCCTGAGCACACCGCCGCCGTGGCATCAGCTGGTCTGTGTGGGCGATTAC
CGCTTTCCTCTCAGCCACAGCGTGCATCAGCTCAAGTATCAGCGCCAGTTTTGGCAAGCGCGGCCCCTGGCTGCATTGCT
CGCGCCCAGAATCACCACGCCGGCGCCGCTGCTCACGTGCGTGCCGTTGCATTGGCGTCGCCAACTGCGGCGCGGCTTCA
ATCAAAGTGATGTGTTGGCACGTCAGCTCGCCCAGCATTTGGGCTGCGAGTATGACCCGCAGCTGTTTTCTCGCCCGCAC
GCCACGGTGCCACAACACGGCTTGGACAAAGCGCAGCGGCGACGCAACCTCAACCGTGCCTTTGTGTTAAACCACGAGCC
GTGCCAGCAACACGTAGCGATTGTCGACGATGTCGTCACCACCGGCAGCACCGTACGGCAATTATGCAATTTACTACTTG
AAGTGGGCGTCAAAAGCCTCGATATTTACTGTATCTGCCGCACTCCTGAACCAAGCGACTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(138-230)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Q2Y1P3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

65.665

100

0.657
  comF Vibrio campbellii strain DS40M4

48.954

100

0.502

Multiple sequence alignment