Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EPB58_RS15120 Genome accession   NZ_CP035693
Coordinates   1099758..1100483 (+) Length   241 a.a.
NCBI ID   WP_033007443.1    Uniprot ID   A0A8B3DV78
Organism   Vibrio harveyi strain 2011V-1164     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1094758..1105483
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB58_RS15105 - 1095883..1098204 (+) 2322 WP_017189965.1 Tex family protein -
  EPB58_RS15110 - 1098308..1098772 (-) 465 WP_009698973.1 hypothetical protein -
  EPB58_RS15115 bioH 1098909..1099673 (-) 765 WP_005448476.1 pimeloyl-ACP methyl ester esterase BioH -
  EPB58_RS15120 comF 1099758..1100483 (+) 726 WP_033007443.1 ComF family protein Machinery gene
  EPB58_RS15125 nfuA 1100581..1101165 (+) 585 WP_005448480.1 Fe-S biogenesis protein NfuA -
  EPB58_RS15130 nudE 1101341..1101907 (+) 567 WP_009698975.1 ADP compounds hydrolase NudE -
  EPB58_RS15135 cysQ 1101955..1102782 (+) 828 WP_017189961.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EPB58_RS15140 - 1103072..1103833 (-) 762 WP_005448490.1 type II secretion system protein N -
  EPB58_RS15145 - 1103835..1104326 (-) 492 WP_005448492.1 type II secretion system protein M -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27681.74 Da        Isoelectric Point: 8.4332

>NTDB_id=343774 EPB58_RS15120 WP_033007443.1 1099758..1100483(+) (comF) [Vibrio harveyi strain 2011V-1164]
MLSHQWQNIMHRVLSSQCGLCRFPIPHRQTPNLMRWCDSCFDHLTPIKRCSRCGLKMTEEESQSSAECGECLKEPPPWRR
LYTLGDYDFPLSQQVQRFKDHGEAWQVSTLTQLLAERIEQPAPVITSVPVHWQRYIKRGFNQSHILTKHLARHLDVRYES
KIFKRVKSAQSQRGNKKASREQNLQGAFALQGEVDFSHVAIVDDVVTTGSTVRQLCHLLLEVGVESIDIYCICRTPAPGS
I

Nucleotide


Download         Length: 726 bp        

>NTDB_id=343774 EPB58_RS15120 WP_033007443.1 1099758..1100483(+) (comF) [Vibrio harveyi strain 2011V-1164]
ATGTTATCTCATCAATGGCAAAACATCATGCATCGCGTACTCAGTAGCCAATGCGGATTATGCCGATTTCCCATACCTCA
CCGCCAAACGCCCAACCTAATGCGTTGGTGTGACAGCTGTTTTGACCACCTCACACCAATCAAACGCTGCTCACGTTGTG
GTTTAAAAATGACAGAAGAGGAATCACAATCCTCCGCAGAGTGCGGAGAATGCCTGAAAGAGCCACCACCATGGCGGCGT
TTGTATACCTTAGGTGACTATGACTTTCCGCTCTCTCAACAAGTACAGCGCTTTAAAGATCACGGCGAGGCATGGCAGGT
GAGTACGCTTACTCAACTATTAGCAGAACGAATTGAGCAGCCTGCCCCCGTCATCACCAGCGTGCCCGTTCACTGGCAGC
GCTACATAAAACGAGGCTTCAATCAGAGCCATATCTTAACCAAACACCTCGCCCGCCATTTAGATGTGCGATATGAAAGC
AAGATATTTAAACGTGTCAAAAGCGCTCAGTCGCAGCGAGGAAACAAAAAAGCCAGTCGCGAGCAAAATCTGCAAGGGGC
ATTTGCCCTACAAGGTGAGGTGGACTTTTCCCACGTCGCGATTGTGGATGATGTGGTTACAACAGGTAGTACGGTCCGAC
AATTATGTCATTTACTACTTGAAGTTGGCGTAGAAAGCATCGATATTTACTGCATCTGCAGAACTCCTGCCCCCGGCTCA
ATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(145-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A8B3DV78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio campbellii strain DS40M4

91.701

100

0.917
  comF Vibrio cholerae strain A1552

47.479

98.755

0.469

Multiple sequence alignment