Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ET950_RS11830 Genome accession   NZ_CP035690
Coordinates   2594059..2594739 (+) Length   226 a.a.
NCBI ID   WP_223173093.1    Uniprot ID   -
Organism   Grimontia hollisae strain 2013V-1029     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2589059..2599739
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET950_RS11805 greB 2589319..2589804 (+) 486 WP_005501634.1 transcription elongation factor GreB -
  ET950_RS11810 - 2589843..2592170 (+) 2328 WP_154124584.1 Tex family protein -
  ET950_RS11815 - 2592237..2592734 (-) 498 WP_114996277.1 ATP-dependent Lon protease -
  ET950_RS11820 - 2592810..2593139 (-) 330 WP_005501637.1 hypothetical protein -
  ET950_RS11825 bioH 2593238..2594019 (-) 782 Protein_2297 pimeloyl-ACP methyl ester esterase BioH -
  ET950_RS11830 comF 2594059..2594739 (+) 681 WP_223173093.1 ComF family protein Machinery gene
  ET950_RS11835 nfuA 2594847..2595431 (+) 585 WP_154124585.1 Fe-S biogenesis protein NfuA -
  ET950_RS11840 dinF 2595494..2596834 (-) 1341 WP_154124586.1 MATE family efflux transporter DinF -
  ET950_RS11845 cyoE 2596914..2597831 (-) 918 WP_114996280.1 heme o synthase -
  ET950_RS11850 - 2597824..2598882 (-) 1059 WP_154124587.1 COX15/CtaA family protein -
  ET950_RS11855 - 2598892..2599425 (-) 534 WP_229333261.1 hypothetical protein -

Sequence

Protein


Download         Length: 226 a.a.        Molecular weight: 25573.01 Da        Isoelectric Point: 9.5522

>NTDB_id=343751 ET950_RS11830 WP_223173093.1 2594059..2594739(+) (comF) [Grimontia hollisae strain 2013V-1029]
MLNIILRALPLRCQLCQHPLGQSRHPWCETCHASLPRHPRCLQCGLPTPYVIESCGHCLKKPPLWDGLICVGTYTFPYDK
LLHRFKYQGHYWLAPALATLLATEIEEPAPLLLPVPMHWRRRISRGFNHSGVLARELAKVLETQYAPNVLKRTRATRQQQ
GLNRQSRLSNLKSAFSVNGKLPPHVALVDDVVTTGATIAQICSLLRRHGVERIDVYCLCRTPPDAI

Nucleotide


Download         Length: 681 bp        

>NTDB_id=343751 ET950_RS11830 WP_223173093.1 2594059..2594739(+) (comF) [Grimontia hollisae strain 2013V-1029]
ATGTTGAACATTATCTTACGTGCCTTGCCCCTGCGCTGTCAGCTTTGCCAGCATCCTCTTGGGCAATCCAGGCACCCCTG
GTGCGAAACGTGTCACGCCAGCTTGCCTCGCCACCCCCGCTGCCTTCAGTGTGGGCTGCCTACCCCCTACGTGATCGAAA
GTTGCGGGCACTGCCTGAAAAAGCCGCCGCTCTGGGACGGGTTAATCTGTGTCGGCACTTATACCTTCCCTTATGACAAA
CTGCTGCACCGGTTCAAATATCAGGGACACTACTGGCTGGCGCCTGCACTTGCCACCTTACTGGCAACAGAAATCGAGGA
GCCAGCCCCCTTACTGTTACCCGTCCCTATGCACTGGCGACGCCGTATCTCACGCGGATTCAACCACAGTGGCGTGTTAG
CCCGCGAGCTTGCAAAGGTTCTGGAGACCCAATATGCGCCCAACGTCTTAAAACGCACCCGTGCCACTCGCCAACAGCAG
GGATTAAACCGACAATCACGCCTTTCCAACCTGAAAAGTGCGTTTTCCGTCAACGGGAAACTACCACCACATGTCGCGCT
GGTCGATGATGTGGTGACCACAGGCGCGACCATCGCCCAGATTTGCAGCTTGCTCAGGCGACATGGTGTGGAACGCATTG
ATGTGTATTGTCTTTGCCGTACCCCGCCCGATGCCATCTAG

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(132-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

52.113

94.248

0.491
  comF Vibrio campbellii strain DS40M4

43.668

100

0.442

Multiple sequence alignment