Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EWA65_RS19335 Genome accession   NZ_CP035688
Coordinates   2409500..2410360 (+) Length   286 a.a.
NCBI ID   WP_141229529.1    Uniprot ID   -
Organism   Vibrio metoecus strain 08-2459     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2404500..2415360
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EWA65_RS10945 greB 2405072..2405554 (-) 483 WP_000850492.1 transcription elongation factor GreB -
  EWA65_RS10950 - 2405795..2408116 (+) 2322 WP_000030095.1 Tex family protein -
  EWA65_RS10955 - 2408211..2408681 (-) 471 WP_055027450.1 hypothetical protein -
  EWA65_RS10960 bioH 2408803..2409564 (-) 762 WP_195708028.1 pimeloyl-ACP methyl ester esterase BioH -
  EWA65_RS19335 comF 2409500..2410360 (+) 861 WP_141229529.1 phosphoribosyltransferase family protein Machinery gene
  EWA65_RS10970 nfuA 2410449..2411036 (+) 588 WP_055030508.1 Fe-S biogenesis protein NfuA -
  EWA65_RS10975 nudE 2411174..2411722 (+) 549 WP_055030509.1 ADP compounds hydrolase NudE -
  EWA65_RS10980 cysQ 2411745..2412572 (+) 828 WP_000106803.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EWA65_RS10985 - 2412615..2413373 (-) 759 WP_154139014.1 type II secretion system protein N -
  EWA65_RS10990 - 2413375..2413872 (-) 498 WP_055027452.1 type II secretion system protein M -
  EWA65_RS10995 gspL 2413882..2415093 (-) 1212 WP_195707970.1 type II secretion system protein GspL -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32573.67 Da        Isoelectric Point: 8.6968

>NTDB_id=343716 EWA65_RS19335 WP_141229529.1 2409500..2410360(+) (comF) [Vibrio metoecus strain 08-2459]
MPQPCTNTKSCPSPLTCQYNAMVTFSPSISIFITAANRQDEMSYPDSWLAMLTHWLRKTTAPLLTPECHLCRLTLDKNSP
FGVCTACQAWLEHGYRCARCGLPTLTPVEQCGQCLRQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLANLLATK
ISEPAPLLCSVPLHWRRRWLRGFNQSDLLARELARSLNTHYDPLLFARRRATPHQQGLSKAQRIKNLRDAFTLNHPPNQQ
HVAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSQG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=343716 EWA65_RS19335 WP_141229529.1 2409500..2410360(+) (comF) [Vibrio metoecus strain 08-2459]
ATACCCCAGCCATGTACCAACACCAAATCTTGCCCTTCTCCACTGACTTGCCAATACAACGCCATGGTCACATTTTCTCC
GTCTATTTCCATCTTCATCACTGCTGCCAATCGGCAAGATGAGATGAGTTACCCTGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACCACCGCACCACTGCTGACTCCAGAATGCCATCTCTGCAGACTGACGCTCGATAAAAACTCGCCG
TTTGGCGTCTGCACCGCCTGCCAAGCTTGGCTTGAACACGGTTATCGCTGCGCTCGCTGCGGTTTACCGACTCTTACCCC
AGTCGAACAGTGCGGACAGTGTCTGCGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGTGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATATCAGCGCCAGTTTTGGCAAGCGCCACGCTTGGCTAATCTGCTCGCAACAAAA
ATTAGCGAGCCCGCCCCTTTGTTGTGCAGTGTTCCGCTACATTGGCGGCGACGTTGGCTACGCGGCTTTAATCAAAGTGA
TCTGCTGGCGCGCGAGTTAGCACGCTCACTCAATACTCACTATGACCCTTTGTTGTTTGCACGCCGCCGAGCCACACCCC
ACCAACAAGGGCTCAGCAAAGCGCAGCGAATAAAAAATTTGCGTGATGCATTTACACTAAATCATCCACCAAACCAACAA
CATGTAGCGATTGTGGATGATGTGGTCACTACGGGTAGCACCATCCGACATTTATGTGATTTACTGCTTGATGTCGGCGT
ACAAAGCATCGATATTTACTGCATCTGCCGCACTCCCGAGCCGAAAGACAGCCAAGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

90.559

100

0.906
  comF Vibrio campbellii strain DS40M4

45.798

83.217

0.381

Multiple sequence alignment