Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   EPB59_RS18885 Genome accession   NZ_CP035686
Coordinates   2899627..2900487 (-) Length   286 a.a.
NCBI ID   WP_154173150.1    Uniprot ID   -
Organism   Vibrio metoecus strain 2011V-1169     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2894627..2905487
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EPB59_RS13250 gspL 2894885..2896096 (+) 1212 WP_195707013.1 type II secretion system protein GspL -
  EPB59_RS13255 gspM 2896106..2896603 (+) 498 WP_055051335.1 type II secretion system protein GspM -
  EPB59_RS13260 - 2896605..2897363 (+) 759 WP_154173144.1 type II secretion system protein N -
  EPB59_RS13265 cysQ 2897415..2898242 (-) 828 WP_154173146.1 3'(2'),5'-bisphosphate nucleotidase CysQ -
  EPB59_RS13270 nudE 2898265..2898813 (-) 549 WP_154173148.1 ADP compounds hydrolase NudE -
  EPB59_RS13275 nfuA 2898951..2899538 (-) 588 WP_055051331.1 Fe-S biogenesis protein NfuA -
  EPB59_RS18885 comF 2899627..2900487 (-) 861 WP_154173150.1 ComF family protein Machinery gene
  EPB59_RS13285 bioH 2900423..2901184 (+) 762 WP_195707120.1 pimeloyl-ACP methyl ester esterase BioH -
  EPB59_RS13290 - 2901428..2901898 (+) 471 WP_000961395.1 hypothetical protein -
  EPB59_RS13295 - 2901990..2904311 (-) 2322 WP_154173154.1 Tex family protein -
  EPB59_RS13300 greB 2904554..2905036 (+) 483 WP_000850497.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32768.77 Da        Isoelectric Point: 8.4523

>NTDB_id=343669 EPB59_RS18885 WP_154173150.1 2899627..2900487(-) (comF) [Vibrio metoecus strain 2011V-1169]
MPQPCTNTRSCPCPLTCQYNAMVTVSPSISIFIHSANWQDEAHYLDSWLAMLTHWLRKTTAPLLTPECHLCRLALDTNSP
FGVCSACQAWFEHGYRCTRCGLPTLTPVDQCGQCLRQPPPWRKLMCVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATQ
INEPAPLLCSVPLHWQRRWLRGFNQSDLLARELARSLHTQYDSQLFARRRATPHQQGLSKAQRIHNLRYAFVLNHQPNQQ
HIAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSKG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=343669 EPB59_RS18885 WP_154173150.1 2899627..2900487(-) (comF) [Vibrio metoecus strain 2011V-1169]
ATGCCCCAGCCGTGTACCAATACTAGATCTTGTCCTTGCCCACTGACTTGCCAATACAACGCCATGGTCACAGTTTCTCC
GTCTATTTCCATCTTCATCCACTCTGCCAATTGGCAAGATGAAGCACATTACCTTGATTCTTGGCTCGCTATGTTAACCC
ATTGGCTCAGAAAAACTACCGCACCGCTGCTGACCCCGGAATGTCATCTCTGCCGACTGGCGCTCGATACAAATTCGCCG
TTTGGCGTCTGCTCTGCCTGCCAAGCTTGGTTTGAGCACGGTTATCGCTGCACACGCTGCGGTTTACCTACTCTTACCCC
TGTTGACCAGTGTGGGCAGTGTCTGCGTCAGCCTCCGCCGTGGCGAAAACTGATGTGTGTCGGCGATTACCGTTTCCCAC
TTAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCACGTTTGGCTAAGCTGCTCGCCACCCAG
ATTAACGAGCCCGCCCCGTTGCTGTGCAGTGTACCACTGCATTGGCAGCGACGTTGGCTACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGCGAGTTAGCACGCTCATTACATACACAGTATGACAGCCAACTCTTTGCGCGCCGACGAGCCACACCGC
ACCAACAAGGACTCAGCAAAGCGCAGCGAATACACAACCTGCGTTATGCATTTGTGCTAAATCATCAGCCAAACCAGCAA
CATATTGCGATTGTGGATGATGTTGTGACCACAGGCAGTACCATCCGACATTTATGCGATTTACTGCTTGATGTCGGCGT
ACAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCAAAGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(190-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

94.056

100

0.941
  comF Vibrio campbellii strain DS40M4

46.218

83.217

0.385

Multiple sequence alignment