Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   ET951_RS21360 Genome accession   NZ_CP035682
Coordinates   1365649..1366509 (-) Length   286 a.a.
NCBI ID   WP_154113152.1    Uniprot ID   -
Organism   Vibrio mimicus strain 2011V-1073     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1360649..1371509
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ET951_RS06385 gspL 1360929..1362140 (+) 1212 WP_187381992.1 type II secretion system protein GspL -
  ET951_RS06390 - 1362150..1362647 (+) 498 WP_187381994.1 type II secretion system protein M -
  ET951_RS06395 - 1362649..1363407 (+) 759 WP_154113151.1 type II secretion system protein N -
  ET951_RS06400 cysQ 1363448..1364274 (-) 827 Protein_1178 3'(2'),5'-bisphosphate nucleotidase CysQ -
  ET951_RS06405 nudE 1364297..1364845 (-) 549 WP_000095822.1 ADP compounds hydrolase NudE -
  ET951_RS06410 nfuA 1364973..1365560 (-) 588 WP_000070175.1 Fe-S biogenesis protein NfuA -
  ET951_RS21360 comF 1365649..1366509 (-) 861 WP_154113152.1 phosphoribosyltransferase family protein Machinery gene
  ET951_RS06420 bioH 1366445..1367206 (+) 762 WP_192927872.1 pimeloyl-ACP methyl ester esterase BioH -
  ET951_RS06425 - 1367329..1367799 (+) 471 WP_000961395.1 hypothetical protein -
  ET951_RS06430 - 1367893..1370214 (-) 2322 WP_000030082.1 Tex family protein -
  ET951_RS06435 greB 1370457..1370939 (+) 483 WP_000850492.1 transcription elongation factor GreB -

Sequence

Protein


Download         Length: 286 a.a.        Molecular weight: 32803.00 Da        Isoelectric Point: 8.9290

>NTDB_id=343621 ET951_RS21360 WP_154113152.1 1365649..1366509(-) (comF) [Vibrio mimicus strain 2011V-1073]
MPQPCTNTRSCPCPLTCQYNAMVTFSPSISIFIRSANRQYEMSYPDSWLAMLTNWLRKTTAPLLIPECHLCRLALDKETP
FGVCTACQAWLEHGYRCARCGLPTLTPVEQCGQCLRQPPPWRKLICVGDYRFPLSDAVHQLKYQRQFWQAPRLAKLLATR
ISEPAPLLCSVPLHWRRRWQRGFNQSDLLARELARSLYTQYDSQLFARRRATPHQQGLSKAQRIHNLRGAFVLNHQPNQQ
HIAIVDDVVTTGSTIRHLCDLLLDVGVQSIDIYCICRTPEPKDSKG

Nucleotide


Download         Length: 861 bp        

>NTDB_id=343621 ET951_RS21360 WP_154113152.1 1365649..1366509(-) (comF) [Vibrio mimicus strain 2011V-1073]
ATGCCCCAGCCGTGCACCAATACTAGATCTTGTCCTTGCCCACTGACTTGCCAATACAACGCCATGGTCACATTTTCTCC
CTCTATTTCCATCTTCATCAGGTCTGCCAATCGGCAATATGAGATGAGTTACCCTGATTCTTGGCTCGCTATGTTAACCA
ATTGGCTCAGAAAAACCACCGCACCACTGCTCATTCCTGAGTGCCATCTTTGTCGACTGGCTCTCGATAAAGAAACCCCG
TTTGGAGTCTGCACCGCCTGCCAAGCTTGGCTTGAGCACGGTTATCGCTGCGCTCGCTGCGGTTTACCGACTCTCACCCC
TGTTGAACAGTGCGGACAGTGTCTGCGTCAGCCTCCGCCGTGGCGAAAACTGATTTGTGTCGGCGATTACCGCTTTCCAC
TCAGTGATGCGGTGCATCAACTCAAATACCAACGCCAGTTTTGGCAAGCGCCACGTTTGGCAAAATTACTCGCCACCCGG
ATTAGCGAGCCAGCCCCTTTGCTGTGCAGCGTGCCACTGCATTGGCGGCGACGTTGGCAACGCGGCTTTAATCAAAGCGA
TCTGCTGGCACGCGAGTTAGCACGCTCATTATATACACAGTATGACAGCCAACTCTTTGCACGCCGCCGAGCCACACCGC
ATCAACAAGGGCTCAGCAAAGCGCAGCGAATACACAACCTGCGCGGTGCGTTTGTGCTAAATCATCAGCCAAACCAGCAA
CATATTGCGATTGTGGATGATGTGGTGACCACAGGCAGTACCATCCGACATTTATGCGATTTACTGCTTGATGTCGGCGT
ACAAAGCATTGATATTTACTGCATATGCCGCACTCCCGAGCCGAAAGATAGCAAAGGTTGA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(189-281)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

90.21

100

0.902
  comF Vibrio campbellii strain DS40M4

47.059

83.217

0.392

Multiple sequence alignment