Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   F9C43_RS25660 Genome accession   NZ_CP045002
Coordinates   5503631..5504056 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain PAG5     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5498631..5509056
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9C43_RS25645 (F9C43_26270) pilX 5499201..5499788 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  F9C43_RS25650 (F9C43_26275) pilY1 5499800..5503285 (+) 3486 WP_034003229.1 type 4a pilus biogenesis protein PilY1 -
  F9C43_RS25655 (F9C43_26280) pilY2 5503287..5503634 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  F9C43_RS25660 (F9C43_26285) comF 5503631..5504056 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  F9C43_RS25665 (F9C43_26290) ispH 5504103..5505047 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  F9C43_RS25670 (F9C43_26295) fkpB 5505133..5505573 (-) 441 WP_003161775.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  F9C43_RS25675 (F9C43_26300) lspA 5505566..5506075 (-) 510 WP_003102615.1 signal peptidase II -
  F9C43_RS25680 (F9C43_26305) ileS 5506068..5508899 (-) 2832 WP_023103515.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=343520 F9C43_RS25660 WP_003094721.1 5503631..5504056(+) (comF) [Pseudomonas aeruginosa strain PAG5]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=343520 F9C43_RS25660 WP_003094721.1 5503631..5504056(+) (comF) [Pseudomonas aeruginosa strain PAG5]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383