Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   F9C43_RS02560 Genome accession   NZ_CP045002
Coordinates   555706..556431 (-) Length   241 a.a.
NCBI ID   WP_034002676.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PAG5     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 550706..561431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F9C43_RS02535 (F9C43_02605) - 551179..551694 (+) 516 WP_003084789.1 glycine cleavage system protein R -
  F9C43_RS02540 (F9C43_02610) rarD 552383..553279 (-) 897 WP_003103301.1 EamA family transporter RarD -
  F9C43_RS02545 (F9C43_02615) - 553482..554456 (-) 975 WP_003084794.1 serine/threonine protein kinase -
  F9C43_RS02550 (F9C43_02620) - 554518..555276 (-) 759 WP_003084796.1 TOBE domain-containing protein -
  F9C43_RS02555 (F9C43_02625) - 555344..555664 (-) 321 WP_003117926.1 YfiM family lipoprotein -
  F9C43_RS02560 (F9C43_02630) comF 555706..556431 (-) 726 WP_034002676.1 ComF family protein Machinery gene
  F9C43_RS02565 (F9C43_02635) - 556570..556863 (-) 294 WP_003113255.1 hypothetical protein -
  F9C43_RS02570 (F9C43_02640) - 556917..557843 (-) 927 WP_003118849.1 LysR family transcriptional regulator -
  F9C43_RS02575 (F9C43_02645) - 557961..558719 (+) 759 WP_003103315.1 5-oxoprolinase subunit PxpA -
  F9C43_RS02580 (F9C43_02650) - 558796..559044 (+) 249 WP_003084813.1 acetyl-CoA carboxylase -
  F9C43_RS02585 (F9C43_02655) - 559055..560431 (+) 1377 WP_034002673.1 acetyl-CoA carboxylase biotin carboxylase subunit -
  F9C43_RS02590 (F9C43_02660) - 560433..561311 (+) 879 WP_003103323.1 5-oxoprolinase subunit B family protein -

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 27092.60 Da        Isoelectric Point: 11.2212

>NTDB_id=343456 F9C43_RS02560 WP_034002676.1 555706..556431(-) (comF) [Pseudomonas aeruginosa strain PAG5]
MSFPLRPLTRWLLPPPACLLCAARSDQPPRPLCRACAADLPWSRQQCRRCALPLPLDGQMCGECLRRPPAYEQAIAPWRY
AFPLDSLINRFKHQAAWPLGRLLGELLAEHLRQRYAEGLPRPARLLPVPLAPRRERRRGFNQAQQLAERLAGELDLRCDP
HSLRRVLDTPAQQGLDATVRRRNLRHAFALAPASDARGLHLALVDDVLTTGATAERLSRLLRRAGAARVDVYCLARTPKP
G

Nucleotide


Download         Length: 726 bp        

>NTDB_id=343456 F9C43_RS02560 WP_034002676.1 555706..556431(-) (comF) [Pseudomonas aeruginosa strain PAG5]
ATGTCGTTCCCGCTTCGTCCTCTCACGCGTTGGCTTTTGCCGCCGCCGGCCTGCCTGCTCTGCGCCGCCCGCAGCGACCA
GCCGCCCCGCCCGCTGTGCCGCGCCTGTGCCGCCGACCTGCCCTGGTCGCGCCAGCAGTGCCGGCGCTGCGCCCTGCCCC
TGCCGCTGGACGGCCAGATGTGCGGCGAGTGCCTGCGCCGCCCGCCGGCCTATGAACAGGCGATCGCGCCCTGGCGCTAC
GCCTTTCCGCTCGACAGCCTGATCAACCGCTTCAAGCACCAGGCGGCCTGGCCGCTGGGGCGGCTGCTCGGCGAGTTGCT
GGCGGAACACCTGCGGCAACGCTACGCCGAAGGCCTGCCGCGCCCGGCACGCCTGCTGCCGGTCCCGCTGGCGCCTCGGC
GCGAACGTCGTCGCGGCTTCAACCAGGCGCAACAGCTCGCCGAGCGACTGGCTGGCGAGCTGGACCTGCGCTGCGATCCG
CACAGCCTGCGGCGAGTGCTGGATACTCCGGCCCAGCAGGGACTGGACGCGACGGTGCGGCGGCGCAACCTGCGCCACGC
CTTCGCCCTGGCGCCCGCCAGCGATGCTCGCGGGCTGCACCTGGCACTGGTGGACGACGTGCTCACCACCGGGGCCACCG
CCGAGCGCCTTTCCCGCCTGTTGCGCCGGGCGGGCGCCGCGCGGGTCGACGTCTACTGCCTGGCGCGCACGCCGAAGCCC
GGCTGA

Domains

Predicted by InterProScan.

Double zinc ribbon domain (DZR_2)

(9-65)

Phosphoribosyl transferase domain (Pribosyltran)

(140-238)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Vibrio cholerae strain A1552

38.174

100

0.382