Detailed information NTG0343307

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: EVU95_RS06075
• Genome accession: NZ_CP035643
• Coordinates: 1277367..1279799 (-)
• Length: 810 a.a.
• NCBI ID: WP_002440136.1
• Uniprot ID: Q5HNT1
• Organism: Staphylococcus epidermidis strain E73
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1272367..1284799

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EVU95_RS06055 (EVU95_06290)	-	1273331..1273639 (-)	309	WP_001830855.1	DUF1292 domain-containing protein	-
EVU95_RS06060 (EVU95_06295)	ruvX	1273654..1274082 (-)	429	WP_001830837.1	Holliday junction resolvase RuvX	-
EVU95_RS06065 (EVU95_06300)	-	1274084..1274344 (-)	261	WP_001830883.1	IreB family regulatory phosphoprotein	-
EVU95_RS06070 (EVU95_06305)	alaS	1274408..1277038 (-)	2631	WP_002440135.1	alanine--tRNA ligase	-
EVU95_RS06075 (EVU95_06310)	recD2	1277367..1279799 (-)	2433	WP_002440136.1	ATP-dependent RecD-like DNA helicase	Machinery gene
EVU95_RS06080 (EVU95_06315)	-	1279801..1280469 (-)	669	WP_001832695.1	tetratricopeptide repeat protein	-
EVU95_RS06085 (EVU95_06320)	mnmA	1280632..1281750 (-)	1119	WP_001830892.1	tRNA 2-thiouridine(34) synthase MnmA	-
EVU95_RS06090 (EVU95_06325)	-	1281750..1282892 (-)	1143	WP_001830848.1	cysteine desulfurase family protein	-
EVU95_RS06095 (EVU95_06330)	-	1283135..1284130 (+)	996	WP_001830781.1	LLM class flavin-dependent oxidoreductase	-
EVU95_RS06100 (EVU95_06335)	-	1284330..1284473 (-)	144	WP_001830746.1	SAS049 family protein	-

Sequence

Protein

• Length: 810 a.a.
• Molecular weight: 91866.57 Da
• Isoelectric Point: 4.7006

>NTDB_id=343307 EVU95_RS06075 WP_002440136.1 1277367..1279799(-) (recD2) [Staphylococcus epidermidis strain E73]
MSDPTLFDYSMIKGTVDAILFQNTDNFYTVLKVDTIESNEKFDSMPTVVGFLPNVVEGDVYTFKGQVVQHPRYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQNIVNTLGENAINDILTRPEILESVPSLPKKKQKQIADQINANQESEKIM
IRLHDLGFGPKLSMAIYQFYMGDTLNVLDKNPYQLVYDIKGIGFNKADQLARNVGIEPHSPERLKAALLFTLEEECIKQG
HTYLPRTIVIETTQNLLNEDIEKPIETEQLLEIIDVLSEEKKLISEADQVSIPSLYYSELKSVQNLYRIKTNTSKLKEIE
QSDLQIHIGDIESQNEVNYSASQKEALETAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLDYDDYNEDDYPVVLA
APTGRASKRLHESTGLEAMTIHRLIGWNQDTQPQDILENEINARLIIIDEMSMVDTWLFHQFLSAVPLEAQIVFVGDEDQ
LPSVGPGQVFKDLIDSEIIPRVNLTEVYRQQDGSSIIDLAHRMKLNEPIDITKRYHDRSFIRCGTNQIPDVVDKVVKSAV
AKGYDMSDIQVLAPMYKGNAGIKRLNQVLQSILNPKQQDDREIEFGEAVFRKGDKVLQLVNRPNDNIFNGDIGIIVGIFW
AKENALNKDVLVVDFEGNEITFTKQDLMELTHAYCTSIHKSQGSEFPIVIMPIVRQYYRMLQRPILYTGLTRAKQSLVLL
GEQEAFDIGLKTNGQIRLTQLNDLLKSYFGQNKNNLTTNKQTINEQKENNNHLDLKNEKENDIQLNESTIFQIDPMINMG
EMTPYDFVER

Nucleotide

• Length: 2433 bp

>NTDB_id=343307 EVU95_RS06075 WP_002440136.1 1277367..1279799(-) (recD2) [Staphylococcus epidermidis strain E73]
ATGTCTGACCCTACACTTTTTGATTATTCAATGATCAAAGGTACAGTTGATGCTATTTTATTTCAAAATACGGATAATTT
TTATACTGTTCTAAAAGTAGATACTATAGAATCAAATGAAAAATTTGATAGTATGCCAACTGTGGTAGGGTTTCTTCCCA
ATGTAGTTGAAGGCGATGTTTATACTTTTAAAGGGCAAGTCGTACAACATCCACGTTATGGTAAGCAATTAAAGGCTGAA
ACATTTGAAAAAGAATTACCTCAAACTAAAGAAGCCATTATTAGTTACTTATCAAGTGATTTATTTAAAGGCATCGGTAA
AAAAACGGCTCAAAACATTGTAAATACACTAGGTGAAAATGCTATAAATGATATTTTAACTCGTCCAGAAATCTTAGAAA
GTGTACCTAGTTTACCAAAGAAGAAACAAAAGCAAATTGCTGATCAGATTAATGCAAACCAAGAATCTGAGAAAATTATG
ATACGTTTACACGACCTAGGGTTTGGTCCGAAATTATCAATGGCTATATATCAGTTCTATATGGGTGATACTTTAAATGT
CTTAGATAAAAATCCTTACCAATTAGTATATGACATTAAAGGTATTGGTTTTAATAAGGCTGACCAACTTGCTCGAAATG
TCGGTATTGAGCCACATTCACCTGAAAGATTAAAAGCAGCATTATTATTTACGTTAGAAGAAGAATGTATCAAACAAGGA
CATACATATCTACCTCGTACAATTGTTATAGAAACAACACAAAATTTACTCAATGAAGATATTGAGAAACCAATTGAAAC
AGAGCAATTACTAGAAATCATTGACGTTTTATCAGAAGAGAAAAAATTAATATCTGAAGCTGATCAGGTATCAATTCCAA
GTTTATACTATTCAGAATTGAAAAGTGTGCAAAACTTATACCGAATTAAAACAAACACATCTAAATTAAAAGAAATAGAA
CAGTCTGATTTACAAATACATATTGGTGATATTGAGTCACAAAATGAGGTTAATTACTCTGCCTCTCAAAAAGAAGCGCT
TGAAACAGCAATAAATTCTAAAATTATGCTTTTAACTGGTGGTCCGGGTACCGGTAAAACCACAGTCATTAAAGGTATAG
TTGAATTATATGCAGAAATACATGGGCTCTCGCTCGATTATGATGATTACAATGAAGATGATTATCCAGTAGTGTTAGCT
GCACCCACTGGTCGTGCTTCTAAGCGCCTTCACGAATCGACAGGTTTAGAAGCAATGACAATTCATCGTTTAATCGGTTG
GAACCAAGATACACAACCACAGGATATTTTAGAAAATGAGATCAATGCAAGACTCATTATCATCGATGAAATGTCAATGG
TAGATACTTGGTTGTTCCATCAATTTTTAAGCGCTGTGCCTTTAGAAGCACAAATTGTATTTGTCGGAGATGAAGATCAG
TTACCATCAGTAGGTCCAGGACAGGTATTTAAAGACCTTATTGATTCTGAAATAATACCGCGTGTTAATCTTACCGAAGT
ATATCGTCAGCAAGATGGTTCCAGTATTATTGACTTAGCTCACCGTATGAAATTAAATGAACCTATCGATATTACTAAAC
GTTATCATGATCGTAGTTTTATTCGTTGTGGTACGAATCAAATTCCAGACGTTGTTGATAAAGTAGTTAAAAGCGCTGTA
GCTAAAGGCTATGATATGAGTGATATACAAGTTTTGGCTCCTATGTATAAAGGTAACGCTGGTATTAAGAGACTTAACCA
AGTTCTACAATCTATTCTTAATCCGAAGCAACAAGATGATCGTGAAATAGAATTTGGTGAAGCTGTGTTTAGAAAAGGGG
ATAAAGTACTTCAGTTAGTTAATCGACCTAATGATAATATATTTAATGGGGATATAGGTATAATAGTAGGTATATTTTGG
GCCAAAGAAAATGCTCTAAATAAGGATGTGTTAGTTGTAGATTTTGAAGGTAATGAAATTACATTTACTAAACAAGATTT
AATGGAACTAACACATGCATATTGTACATCTATCCATAAATCACAAGGTTCAGAATTTCCTATTGTAATTATGCCTATTG
TTAGACAATATTATAGGATGTTACAACGTCCCATTCTTTATACAGGATTAACTAGAGCTAAACAATCACTTGTTTTGCTT
GGTGAACAAGAAGCATTTGATATAGGTTTAAAAACAAATGGACAAATACGATTAACGCAATTAAATGATTTGTTAAAATC
GTATTTTGGACAAAACAAAAATAATTTAACTACAAATAAACAAACGATTAACGAACAAAAAGAAAATAACAATCATCTGG
ATTTGAAAAATGAAAAAGAAAATGATATCCAATTAAACGAGTCGACAATTTTCCAAATCGATCCAATGATTAATATGGGG
GAAATGACGCCATATGACTTCGTTGAACGTTGA

Domains

Predicted by InterproScan.

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-720)

• AAA domain (AAA_30) (339-545)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

3D structure

• AlphaFold DB: Q5HNT1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	49.134	99.753	0.49