Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   EU243_RS15640 Genome accession   NZ_CP035533
Coordinates   3179538..3180317 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain DTU001     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 3174538..3185317
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EU243_RS15610 (EU243_15845) fliH 3174582..3175337 (-) 756 WP_003154255.1 flagellar assembly protein FliH -
  EU243_RS15615 (EU243_15850) fliG 3175330..3176346 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  EU243_RS15620 (EU243_15855) fliF 3176359..3177969 (-) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  EU243_RS15625 (EU243_15860) fliE 3178012..3178332 (-) 321 WP_003154258.1 flagellar hook-basal body complex protein FliE -
  EU243_RS15630 (EU243_15865) flgC 3178343..3178795 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  EU243_RS15635 (EU243_15870) flgB 3178795..3179184 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  EU243_RS15640 (EU243_15875) codY 3179538..3180317 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  EU243_RS15645 (EU243_15880) hslU 3180355..3181758 (-) 1404 WP_003154265.1 HslU--HslV peptidase ATPase subunit -
  EU243_RS15650 (EU243_15885) hslV 3181775..3182320 (-) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  EU243_RS15655 (EU243_15890) xerC 3182336..3183253 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  EU243_RS15660 (EU243_15895) trmFO 3183323..3184630 (-) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=343014 EU243_RS15640 WP_003154263.1 3179538..3180317(-) (codY) [Bacillus velezensis strain DTU001]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=343014 EU243_RS15640 WP_003154263.1 3179538..3180317(-) (codY) [Bacillus velezensis strain DTU001]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAATGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCATTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471

Multiple sequence alignment