Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SACTE_RS04420 Genome accession   NC_015953
Coordinates   1040352..1041725 (-) Length   457 a.a.
NCBI ID   WP_014044829.1    Uniprot ID   -
Organism   Streptomyces sp. SirexAA-E     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1035352..1046725
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SACTE_RS04395 (SACTE_0905) - 1035549..1035893 (-) 345 WP_014044824.1 DUF6167 family protein -
  SACTE_RS04400 (SACTE_0906) - 1035901..1036341 (-) 441 WP_019993675.1 DUF948 domain-containing protein -
  SACTE_RS04405 (SACTE_0907) - 1036562..1038820 (+) 2259 WP_014044826.1 AAA family ATPase -
  SACTE_RS04410 (SACTE_0908) rpsD 1038838..1039452 (-) 615 WP_014044827.1 30S ribosomal protein S4 -
  SACTE_RS04415 (SACTE_0909) - 1039641..1040342 (+) 702 WP_026359218.1 DUF2470 domain-containing protein -
  SACTE_RS04420 (SACTE_0910) rarA 1040352..1041725 (-) 1374 WP_014044829.1 replication-associated recombination protein A Machinery gene
  SACTE_RS04425 (SACTE_0911) - 1041768..1042403 (-) 636 WP_014044830.1 vitamin K epoxide reductase family protein -
  SACTE_RS04430 (SACTE_0912) hisS 1042699..1043961 (-) 1263 WP_014044831.1 histidine--tRNA ligase -
  SACTE_RS04435 (SACTE_0913) - 1043978..1044664 (-) 687 WP_014044832.1 MBL fold metallo-hydrolase -
  SACTE_RS04440 (SACTE_0914) - 1044814..1045599 (+) 786 WP_014044833.1 peptidylprolyl isomerase -

Sequence

Protein


Download         Length: 457 a.a.        Molecular weight: 48612.11 Da        Isoelectric Point: 6.3001

>NTDB_id=34291 SACTE_RS04420 WP_014044829.1 1040352..1041725(-) (rarA) [Streptomyces sp. SirexAA-E]
MEPDLFTAAAEDRQEKDPSSSPLAVRMRPRTLDEVVGQQHLLKPGSPLRRLVGEAGGGPAGPSSVILWGPPGTGKTTLAY
VVSKATNKRFVELSAITAGVKEVRAVIEGARRATGGFGKETVLFLDEIHRFSKAQQDSLLPAVENRWVTLIAATTENPYF
SIISPLLSRSLLLTLEPLTDEDLRALLRRAVSDERGLTGAVALPEDAEAHLLRIAGGDARRALTALEAAAGAALAKHEAE
ITLETLEETVDRAAVKYDRDGDQHYDVASALIKSIRGSDVDAALHYLARMIEAGEDPRFIARRLMISASEDIGLADPTAL
PTAVAAAQAVAMIGFPEAALTLSHATIALALAPKSNAATLAIFAAQEDVRRGLAGPVPAHLRDGHYKGAAKLGHAQGYIY
PHDVPGGIAAQEYAPEAVRGRKYYEPTRYGAEARYADVADRVRERLGRGEQGGAPSA

Nucleotide


Download         Length: 1374 bp        

>NTDB_id=34291 SACTE_RS04420 WP_014044829.1 1040352..1041725(-) (rarA) [Streptomyces sp. SirexAA-E]
GTGGAGCCCGATCTCTTTACCGCAGCAGCCGAAGACCGCCAGGAGAAGGACCCGTCCAGCAGCCCCCTCGCTGTCCGGAT
GCGTCCGCGTACGCTCGACGAGGTCGTCGGCCAGCAGCATCTGCTCAAGCCCGGCTCACCTCTGCGCCGTCTCGTCGGCG
AGGCCGGCGGGGGACCGGCCGGCCCCTCGTCGGTGATCCTCTGGGGGCCACCCGGCACCGGCAAGACCACGCTCGCGTAC
GTGGTCAGCAAGGCCACCAACAAGCGCTTCGTCGAGCTCTCCGCGATCACCGCGGGCGTCAAGGAGGTCCGGGCCGTCAT
CGAGGGCGCGCGCCGCGCCACCGGCGGCTTCGGCAAGGAGACCGTCCTCTTCCTCGACGAGATCCACCGCTTCTCCAAGG
CCCAGCAGGACTCGCTGCTCCCCGCCGTGGAGAACCGCTGGGTGACCCTCATCGCGGCCACCACCGAGAACCCGTACTTC
TCGATCATCTCCCCGCTGCTGTCGCGCTCCCTGCTGCTGACGCTGGAGCCGCTCACCGACGAGGACCTGCGCGCGCTGCT
GCGCCGGGCCGTGTCCGACGAGCGCGGGCTGACCGGCGCGGTCGCCCTGCCCGAGGACGCCGAGGCGCACCTGCTGCGGA
TCGCGGGCGGCGACGCCCGGCGCGCGCTGACCGCACTGGAGGCGGCCGCCGGAGCGGCCCTCGCCAAGCACGAGGCGGAG
ATCACGCTGGAGACGCTGGAGGAGACCGTCGACCGCGCCGCCGTGAAGTACGACCGGGACGGCGACCAGCACTACGACGT
GGCGAGCGCCCTGATCAAGTCGATCCGCGGCTCCGACGTGGACGCGGCCCTGCACTACCTGGCGCGGATGATCGAGGCGG
GGGAGGACCCGCGGTTCATCGCCCGGCGGCTGATGATCTCCGCCAGTGAGGACATCGGGCTGGCCGACCCGACGGCGCTG
CCCACCGCGGTGGCGGCCGCCCAGGCCGTCGCGATGATCGGCTTCCCGGAGGCCGCGCTCACCCTCAGCCACGCCACCAT
CGCGCTGGCACTGGCCCCGAAGTCCAACGCCGCGACGCTGGCGATCTTCGCCGCGCAGGAGGACGTGCGCAGGGGCCTCG
CCGGCCCGGTCCCGGCCCATCTGCGCGACGGCCACTACAAGGGCGCGGCCAAGCTCGGCCACGCCCAGGGCTACATCTAC
CCGCACGACGTGCCCGGAGGCATCGCCGCCCAGGAGTACGCCCCGGAGGCCGTCCGCGGCAGGAAGTACTACGAGCCCAC
GCGGTACGGCGCCGAGGCGCGGTACGCGGACGTGGCGGACCGGGTCCGCGAGCGGCTCGGCCGCGGGGAGCAGGGCGGCG
CCCCGTCCGCGTGA

Domains

Predicted by InterProScan.

ATPase family associated with various cellular activities (AAA) (AAA)

(65-169)

AAA C-terminal domain (AAA_assoc_2)

(200-276)

MgsA AAA+ ATPase C terminal (MgsA_C)

(277-441)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

44.988

93.873

0.422

Multiple sequence alignment