Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   FSA31_RS08515 Genome accession   NZ_CP044492
Coordinates   1703718..1706081 (+) Length   787 a.a.
NCBI ID   WP_002284755.1    Uniprot ID   -
Organism   Streptococcus mutans strain T8     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1698718..1711081
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA31_RS08495 (FSA31_1682) - 1701071..1701616 (-) 546 WP_002284757.1 CvpA family protein -
  FSA31_RS08500 (FSA31_1683) - 1701613..1701918 (-) 306 WP_002263360.1 hypothetical protein -
  FSA31_RS08505 (FSA31_1684) rnhC 1702114..1703025 (+) 912 WP_002284756.1 ribonuclease HIII -
  FSA31_RS08510 (FSA31_1685) lepB 1703045..1703632 (+) 588 WP_002265468.1 signal peptidase I -
  FSA31_RS08515 (FSA31_1686) recD/recD2/recDB 1703718..1706081 (+) 2364 WP_002284755.1 ATP-dependent RecD-like DNA helicase Machinery gene
  FSA31_RS08520 (FSA31_1687) - 1706180..1706650 (+) 471 WP_002263356.1 hypothetical protein -
  FSA31_RS08525 (FSA31_1688) - 1707525..1708517 (+) 993 WP_002265466.1 PTS sugar transporter subunit IIB -
  FSA31_RS08530 (FSA31_1689) - 1708552..1709370 (+) 819 WP_002263354.1 PTS mannose/fructose/sorbose transporter subunit IIC -
  FSA31_RS08535 (FSA31_1690) - 1709385..1710311 (+) 927 WP_002265465.1 PTS system mannose/fructose/sorbose family transporter subunit IID -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88857.30 Da        Isoelectric Point: 5.4857

>NTDB_id=342828 FSA31_RS08515 WP_002284755.1 1703718..1706081(+) (recD/recD2/recDB) [Streptococcus mutans strain T8]
MTYYFSGTIDRVIFENTSNFFKIILLEIDDTDSDFDDFEIIVTGTIADIIEGENYTFWGELTQHPKYGQQLKVERYQRAK
PSSAGLIKYFSSQHFKGIGKKTAEKIIHLYGDDPIDNILEDPDKLESISGLSKANRENLVSKLRLNYGAEQILAKLAEYG
LNNKTAVQIFERYKEESLTVITENPYQLVEDIQGIGFKMADKLAEQVGINSDAPQRFRAALVHTLLETSIDKGDTYIEAK
ELLEKSLFILEEVRQVELDPSQIAQELTQLISEDKVQNIGTKIFDNTLFYAESGIHKHLTRILDRPLEKEISSQDIQTEI
KHIQAEFNINYDKAQKNAIQKAIQSKVFLLTGGPGTGKTTVINGIIKAYANLHQIDLQKSDLPIILAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDSEYQALDEFLDCDLIIIDEFSMVDTWLANQLFSAIASNTQIVIVGDSDQLPSVGPGQVLADLL
KINRLPQVSLTKIFRQSEDSTIVTLANQIRQGRLPTDFTAKKADRSYFEAQSTHIPQMIQKIVSSALKSGIDAQEIQILA
PMYRGQAGITHLNKLMQDLLNPLNNQLEFQFNDLHFRKGDKVLHLINDAQINVFNGDIGYITDLIPAKYTESKQDEMILD
FDGTEINYPRNEWLKITLAYAMSIHKSQGSEFKVVILPVTRQSGRLLQRNLIYTAITRSKSKLVMLGEIAAFDNAIKNEG
TKRKTYLIERFKKDECSGHHNTEKNKQGVKESAAILKEDFILTERNILTIDPMIGLSQADIDLFFKK

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=342828 FSA31_RS08515 WP_002284755.1 1703718..1706081(+) (recD/recD2/recDB) [Streptococcus mutans strain T8]
ATGACCTATTACTTTTCAGGCACCATTGACCGTGTTATTTTTGAAAATACCAGCAATTTTTTTAAAATTATTCTTCTGGA
AATTGACGATACTGACAGCGATTTTGATGATTTTGAAATTATTGTGACAGGTACTATTGCTGATATTATTGAAGGAGAAA
ACTATACTTTTTGGGGTGAATTGACCCAGCATCCTAAATATGGACAGCAGTTAAAAGTGGAAAGATACCAGCGTGCTAAA
CCCTCTTCTGCTGGTCTGATTAAGTATTTTTCCAGTCAGCATTTCAAGGGAATCGGGAAAAAAACAGCCGAAAAAATTAT
TCACTTATATGGTGATGACCCTATTGATAATATTCTGGAAGATCCTGATAAGTTAGAAAGCATTAGTGGACTTTCTAAGG
CTAATAGAGAAAATTTAGTTAGTAAACTTCGTCTTAACTACGGTGCTGAACAGATTCTGGCAAAATTAGCAGAATATGGA
TTAAATAACAAAACAGCTGTTCAAATTTTTGAACGCTATAAAGAAGAAAGTTTGACTGTTATTACTGAAAATCCTTATCA
ACTGGTTGAGGACATTCAAGGCATTGGATTCAAAATGGCTGACAAATTAGCAGAACAAGTAGGTATTAACAGCGATGCTC
CTCAGCGTTTTCGTGCTGCTCTTGTTCATACTCTTTTAGAAACCTCTATTGATAAAGGTGACACCTATATTGAAGCCAAA
GAATTACTCGAAAAATCTCTTTTTATTCTTGAAGAAGTGAGACAAGTCGAACTGGATCCCAGTCAAATTGCTCAGGAACT
GACACAATTAATCTCCGAAGATAAGGTACAAAATATTGGTACTAAAATCTTTGATAATACGCTTTTTTATGCCGAATCAG
GCATTCATAAGCATCTTACCCGCATTCTGGATAGACCACTTGAAAAAGAGATCAGCAGCCAAGATATTCAAACTGAAATT
AAACATATTCAAGCAGAATTTAATATTAACTATGACAAGGCACAAAAAAATGCTATCCAAAAAGCCATCCAAAGCAAGGT
TTTCCTTTTAACAGGCGGTCCAGGAACCGGAAAAACGACTGTCATCAATGGAATTATTAAGGCTTATGCTAATTTGCATC
AAATTGACCTGCAAAAAAGTGACCTACCTATTATTCTGGCTGCCCCGACTGGTCGTGCTGCTAGACGGATGAATGAGCTA
ACAGGTTTACCTAGTGCCACCATTCACCGGCATTTAGGACTTAATGGTGATAGTGAATATCAGGCACTTGATGAATTTCT
GGATTGTGATCTCATTATTATTGACGAGTTTTCTATGGTTGATACTTGGCTAGCCAATCAATTGTTTAGTGCTATTGCTT
CAAATACACAAATTGTTATTGTTGGTGATAGCGATCAGCTCCCATCCGTCGGTCCAGGTCAAGTTTTGGCTGATTTACTG
AAAATAAATAGATTACCGCAAGTTTCCTTAACTAAAATATTCAGGCAATCTGAGGACTCAACTATTGTTACACTTGCCAA
CCAGATTCGCCAAGGTCGTCTACCAACTGATTTCACAGCTAAAAAGGCCGACCGTTCTTATTTTGAAGCGCAGAGCACTC
ACATTCCGCAAATGATTCAAAAGATTGTCAGTTCTGCCCTTAAAAGTGGTATAGATGCTCAGGAAATACAGATTTTAGCA
CCGATGTATCGTGGGCAAGCAGGTATTACGCATCTTAATAAACTGATGCAAGATTTGCTCAATCCTTTAAATAACCAGTT
AGAATTTCAATTTAATGACCTTCATTTTCGTAAGGGCGATAAAGTACTTCATCTTATCAACGATGCGCAAATTAACGTGT
TTAATGGTGACATTGGGTACATTACTGATCTTATTCCTGCAAAATATACAGAGTCCAAACAAGATGAAATGATTCTGGAT
TTTGATGGAACTGAGATTAACTATCCTCGCAATGAATGGTTGAAAATAACACTCGCTTACGCTATGAGTATCCACAAATC
TCAAGGCAGTGAATTTAAAGTAGTTATTCTTCCTGTCACACGCCAAAGCGGCAGACTTTTGCAACGCAATCTCATTTATA
CAGCTATCACACGCTCAAAAAGCAAACTTGTTATGTTGGGAGAAATTGCAGCCTTTGACAACGCCATCAAAAATGAAGGA
ACTAAAAGAAAAACTTATCTTATTGAACGCTTTAAGAAGGATGAATGCAGTGGCCACCATAACACCGAGAAAAATAAACA
AGGAGTAAAAGAAAGTGCAGCTATATTAAAAGAAGATTTTATTTTGACAGAAAGAAATATCTTAACGATTGACCCTATGA
TTGGCTTATCTCAAGCTGACATTGACTTATTTTTTAAGAAATAA

Domains

Predicted by InterProScan.

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

AAA domain (AAA_30)

(331-524)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

43.145

94.536

0.408