Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FSA31_RS08295 Genome accession   NZ_CP044492
Coordinates   1659256..1660041 (-) Length   261 a.a.
NCBI ID   WP_002276477.1    Uniprot ID   -
Organism   Streptococcus mutans strain T8     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654256..1665041
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FSA31_RS08275 (FSA31_1639) gatA 1654799..1656265 (-) 1467 WP_002271770.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  FSA31_RS08280 (FSA31_1640) gatC 1656265..1656567 (-) 303 WP_002263475.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  FSA31_RS08285 (FSA31_1641) aspS 1656694..1658445 (-) 1752 WP_002284241.1 aspartate--tRNA ligase -
  FSA31_RS08290 (FSA31_1642) - 1658703..1659254 (-) 552 WP_002263473.1 isochorismatase family cysteine hydrolase -
  FSA31_RS08295 (FSA31_1643) codY 1659256..1660041 (-) 786 WP_002276477.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FSA31_RS08300 (FSA31_1644) - 1660150..1661364 (-) 1215 WP_002263471.1 pyridoxal phosphate-dependent aminotransferase -
  FSA31_RS08305 (FSA31_1645) - 1661541..1662077 (+) 537 WP_002263470.1 biotin transporter BioY -
  FSA31_RS08310 (FSA31_1646) - 1662175..1662624 (+) 450 WP_002263469.1 universal stress protein -
  FSA31_RS08315 (FSA31_1647) - 1662902..1664287 (-) 1386 WP_002284242.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28940.11 Da        Isoelectric Point: 4.5032

>NTDB_id=342820 FSA31_RS08295 WP_002276477.1 1659256..1660041(-) (codY) [Streptococcus mutans strain T8]
MANLLSKTRRITSILQRSVESLQSDLPYNTIADQLAEIIDCNACIIDGSGIILGYAMKYKTNTDRVEEFFQAKKLPDDYV
KSASRIYDTEANLSVENDLTIFPIESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFNDDDLILIEISSTVVGIQLLN
LQTENLEETIRKQTAINMAINTLSYSEMKAVAAILNELDGNEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKDYG

Nucleotide


Download         Length: 786 bp        

>NTDB_id=342820 FSA31_RS08295 WP_002276477.1 1659256..1660041(-) (codY) [Streptococcus mutans strain T8]
ATGGCTAATTTATTATCGAAAACGCGACGTATTACATCCATTTTACAACGCTCGGTTGAGAGCCTTCAAAGTGATTTGCC
TTATAATACGATTGCAGATCAATTGGCTGAAATTATTGATTGTAATGCTTGTATTATTGATGGTAGTGGTATTATTCTCG
GCTATGCTATGAAGTATAAAACCAATACAGATCGTGTTGAAGAATTTTTCCAGGCTAAAAAATTACCTGATGATTATGTA
AAATCAGCCAGCCGTATTTATGATACAGAAGCCAATCTGTCGGTTGAAAATGATTTGACCATTTTTCCAATTGAATCAAA
AGATATCTATCCTGATGGCTTGACGACTATTGCTCCCATCTATGGCGGCGGTATGCGTCTTGGTTCTCTTATTATCTGGC
GTAATGATAAAGAATTCAATGATGACGATTTGATTCTAATTGAGATTTCTTCTACTGTTGTTGGAATTCAATTATTGAAC
TTGCAGACAGAAAATCTTGAAGAAACAATTCGTAAGCAGACTGCTATTAATATGGCGATTAATACCTTGTCTTATTCAGA
AATGAAAGCTGTCGCAGCTATTCTCAATGAATTAGATGGCAATGAAGGTCGCTTGACCGCATCGGTTATTGCTGATCGTA
TCGGTATTACACGTAGCGTGATTGTTAATGCTCTTAGAAAGTTAGAAAGTGCCGGTATTATTGAAAGTCGTTCCTTAGGT
ATGAAAGGTACTTATCTCAAAGTTATTAATGAAGGTATTTTTGATAAATTAAAGGACTATGGTTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-260)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.37

98.467

0.644
  codY Bacillus subtilis subsp. subtilis str. 168

48.047

98.084

0.471