Detailed information    

insolico Bioinformatically predicted

Overview

Name   ylbF   Type   Regulator
Locus tag   F7V86_RS14940 Genome accession   NZ_CP044444
Coordinates   2898963..2899412 (+) Length   149 a.a.
NCBI ID   WP_003154472.1    Uniprot ID   A7Z4C2
Organism   Bacillus amyloliquefaciens strain KC41     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 2893963..2904412
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7V86_RS14900 ctaE 2894095..2894718 (+) 624 WP_003154482.1 cytochrome c oxidase subunit III -
  F7V86_RS14905 ctaF 2894721..2895053 (+) 333 WP_007409686.1 cytochrome c oxidase subunit IVB -
  F7V86_RS14910 ctaG 2895078..2895962 (+) 885 WP_106067842.1 cytochrome c oxidase assembly factor CtaG -
  F7V86_RS14915 - 2895996..2896355 (-) 360 WP_007409688.1 YugN family protein -
  F7V86_RS14920 - 2896495..2896938 (+) 444 WP_017417724.1 CBS domain-containing protein -
  F7V86_RS14925 - 2897023..2898063 (+) 1041 WP_014417703.1 CAP domain-containing protein -
  F7V86_RS14930 - 2898227..2898637 (+) 411 WP_007409691.1 YlbD family protein -
  F7V86_RS14935 - 2898653..2898892 (+) 240 WP_003154475.1 YlbE-like family protein -
  F7V86_RS14940 ylbF 2898963..2899412 (+) 450 WP_003154472.1 YlbF family regulator Regulator
  F7V86_RS14945 - 2899471..2899743 (+) 273 WP_014417705.1 YlbG family protein -
  F7V86_RS14955 rsmD 2900042..2900596 (+) 555 WP_014417706.1 16S rRNA (guanine(966)-N(2))-methyltransferase RsmD -
  F7V86_RS14960 coaD 2900601..2901083 (+) 483 WP_025649487.1 pantetheine-phosphate adenylyltransferase -
  F7V86_RS14965 ylbJ 2901102..2902328 (-) 1227 WP_003154466.1 sporulation integral membrane protein YlbJ -
  F7V86_RS14970 - 2902508..2903287 (+) 780 WP_014304961.1 patatin family protein -
  F7V86_RS14975 sepM 2903293..2904315 (+) 1023 WP_065180255.1 SepM family pheromone-processing serine protease Regulator

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16777.86 Da        Isoelectric Point: 4.8089

>NTDB_id=342698 F7V86_RS14940 WP_003154472.1 2898963..2899412(+) (ylbF) [Bacillus amyloliquefaciens strain KC41]
MYATIESVKLQSEAEQLAGMILQSETAENYRDCYKRLREDEEAGRIIRSFMSVKEQYEDVQRFGKYHPDYREISRKMREM
KRELDLNDKVAEFKKAETELQSLLDEISIELGTAVSEHVKVPTGNPYFDGLSSCGGGCGSGGGCGCKVS

Nucleotide


Download         Length: 450 bp        

>NTDB_id=342698 F7V86_RS14940 WP_003154472.1 2898963..2899412(+) (ylbF) [Bacillus amyloliquefaciens strain KC41]
ATGTATGCAACAATTGAGTCCGTCAAGCTTCAAAGTGAAGCGGAGCAGCTTGCCGGCATGATTCTGCAGTCTGAGACGGC
TGAAAATTACCGCGATTGTTACAAGCGTCTCCGTGAAGATGAAGAGGCAGGGCGGATCATTCGTTCTTTTATGAGCGTTA
AAGAGCAGTATGAGGATGTGCAGCGCTTTGGCAAATACCATCCTGATTATAGAGAGATTTCCCGCAAAATGAGAGAAATG
AAGCGGGAACTGGATTTAAACGATAAGGTGGCCGAATTTAAAAAAGCGGAGACTGAGCTTCAGTCGCTGCTTGACGAGAT
CAGCATTGAACTCGGAACGGCCGTCTCGGAGCATGTAAAAGTTCCGACGGGGAATCCTTATTTTGACGGCCTGTCATCCT
GCGGCGGCGGGTGCGGTTCCGGCGGCGGCTGCGGATGCAAAGTTTCCTGA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(12-115)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4C2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ylbF Bacillus subtilis subsp. subtilis str. 168

87.919

100

0.879