Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EUBREC_RS09805 Genome accession   NC_012781
Coordinates   2019562..2021415 (-) Length   617 a.a.
NCBI ID   WP_015569470.1    Uniprot ID   A0A174GH88
Organism   Agathobacter rectalis ATCC 33656     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2014562..2026415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EUBREC_RS09790 (EUBREC_2168) - 2016210..2017103 (+) 894 WP_012743004.1 DUF5688 family protein -
  EUBREC_RS09795 (EUBREC_2169) glgA 2017232..2018683 (-) 1452 WP_012743005.1 glycogen synthase GlgA -
  EUBREC_RS18315 - 2018852..2019196 (-) 345 Protein_1940 sporulation initiation factor Spo0A C-terminal domain-containing protein -
  EUBREC_RS09805 (EUBREC_2171) rcrQ 2019562..2021415 (-) 1854 WP_015569470.1 ABC transporter ATP-binding protein Regulator
  EUBREC_RS09810 (EUBREC_2172) - 2021417..2023594 (-) 2178 WP_012743008.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 617 a.a.        Molecular weight: 68447.20 Da        Isoelectric Point: 6.9416

>NTDB_id=34263 EUBREC_RS09805 WP_015569470.1 2019562..2021415(-) (rcrQ) [Agathobacter rectalis ATCC 33656]
MSENNNEQFKMPPKRPRGPMGRGPGMVTEKARDFKGSTKKLIKYLGRYWAAIIAVMIFAAVSTVFSVAGPKVMGKATTAL
AEGLMNKIAGTGGIDFDYIAKVLLFTLALYVVSAIFMFAQGLIMTGITQKTCYRMRKDITSKINRMPMKYFESRTYGEVL
SRITNDVDTLGQSLNQSITQIITSVATLVGTLVMMLSISPLMTLISLVILPVSMILISFVIKHSQKYFRQQQEYLGHING
QVEEVYGGHLVIKAYNKEAETVKTFKEANNVLYKSAWKSQFLSGLMMPIMQFVGNLGYAGVAISGGILAIKNVITIGDIQ
AFIQYVKNFTQPIQQIAQVANQLQSMAAASERVFEFLDEEEEDITVENPVKPDHIEGSVEFSHVHFGYNPDQIIINDFSA
KVKPGQQVAIVGPTGAGKTTMVKLLMRFYDVSSGAILVDGHDIRDYNRADLRDAFGMVLQDTWLFKGTIMENIRYGRLDA
TDEEVIAAAKAAHAHHFIQTLPGGYDMELNEDASNVSQGQKQLLTIARAILADNPILILDEATSSVDTRTEIRIQKALDN
LMKGRTSFVIAHRLSTIKNADMILVMKDGDIIEQGTHDELLAKNGFYAELYNSQFEE

Nucleotide


Download         Length: 1854 bp        

>NTDB_id=34263 EUBREC_RS09805 WP_015569470.1 2019562..2021415(-) (rcrQ) [Agathobacter rectalis ATCC 33656]
ATGAGTGAGAATAATAACGAACAGTTTAAGATGCCTCCTAAGAGGCCAAGAGGGCCAATGGGACGTGGCCCCGGAATGGT
CACAGAAAAGGCCAGGGATTTCAAGGGCTCTACAAAGAAACTCATAAAGTATCTCGGCAGATACTGGGCTGCTATCATTG
CAGTTATGATTTTTGCAGCAGTTTCGACTGTCTTCTCCGTTGCAGGACCGAAGGTCATGGGTAAAGCCACCACTGCGCTT
GCCGAGGGACTCATGAACAAGATTGCAGGAACAGGCGGCATAGATTTTGATTATATTGCAAAGGTTCTTTTGTTTACGCT
GGCTTTATATGTGGTGAGTGCCATCTTTATGTTTGCCCAGGGACTTATCATGACAGGCATCACGCAGAAGACCTGCTACA
GGATGCGTAAGGACATCACGAGCAAAATCAACCGTATGCCGATGAAGTATTTCGAGTCAAGGACATATGGTGAGGTACTT
TCGCGTATCACAAACGATGTGGACACACTCGGACAGAGCTTGAACCAGAGTATCACACAGATTATTACATCTGTTGCCAC
TTTGGTCGGTACACTGGTCATGATGCTGTCTATTTCACCGCTCATGACGCTGATTTCACTCGTTATCCTGCCAGTTTCGA
TGATACTTATTTCGTTTGTCATAAAGCATTCACAGAAATACTTCAGACAGCAGCAGGAGTATCTGGGACACATAAACGGA
CAGGTCGAGGAGGTGTACGGAGGCCACCTCGTCATAAAGGCATATAATAAAGAGGCAGAGACTGTAAAGACCTTTAAGGA
GGCCAACAATGTGCTCTACAAATCCGCATGGAAATCACAGTTCCTTTCAGGACTTATGATGCCTATCATGCAGTTTGTAG
GAAACTTAGGATATGCGGGAGTAGCCATCTCAGGTGGTATACTTGCCATAAAGAATGTCATCACAATCGGTGATATCCAG
GCATTTATACAGTATGTGAAGAATTTCACACAGCCAATCCAGCAGATAGCGCAGGTGGCAAACCAGCTTCAGTCGATGGC
GGCTGCATCTGAGCGTGTATTTGAGTTCCTCGATGAGGAGGAAGAGGATATAACAGTGGAAAATCCTGTAAAGCCAGACC
ATATCGAGGGAAGTGTAGAGTTTTCGCATGTACACTTTGGTTATAATCCTGACCAGATCATCATCAATGATTTTTCTGCA
AAGGTAAAGCCGGGACAGCAGGTTGCTATCGTTGGACCGACAGGAGCGGGAAAGACTACCATGGTCAAGCTTCTTATGAG
ATTTTATGATGTAAGCTCAGGTGCCATTCTTGTAGACGGACATGATATCAGGGATTACAACAGAGCCGATCTGCGAGATG
CATTCGGCATGGTATTGCAGGACACATGGCTCTTTAAGGGCACCATTATGGAAAATATCCGCTACGGCCGTCTGGATGCC
ACAGATGAGGAGGTCATCGCGGCAGCAAAGGCAGCACATGCGCATCACTTTATCCAGACATTGCCGGGTGGCTACGATAT
GGAGCTCAACGAGGATGCATCCAATGTGTCACAGGGACAAAAGCAGCTTTTGACAATAGCAAGAGCCATTCTTGCAGACA
ATCCAATCCTTATCCTTGATGAGGCCACATCCTCTGTCGATACACGTACAGAAATCCGTATCCAGAAGGCACTCGACAAT
CTGATGAAGGGCAGAACAAGCTTTGTCATCGCCCACAGGCTGTCTACTATCAAGAATGCCGATATGATTCTTGTCATGAA
GGACGGAGACATTATCGAGCAGGGTACACACGATGAGCTTCTTGCAAAGAACGGATTTTACGCAGAGCTGTATAACTCTC
AGTTTGAAGAATAG

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(396-544)

ABC transporter transmembrane region (ABC_membrane)

(52-332)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A174GH88

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.286

94.489

0.485

Multiple sequence alignment