Detailed information    

insolico Bioinformatically predicted

Overview

Name   rarA   Type   Machinery gene
Locus tag   SALIVB_RS09955 Genome accession   NC_015760
Coordinates   2144110..2145378 (-) Length   422 a.a.
NCBI ID   WP_002887077.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2139110..2150378
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS09925 (SALIVB_2073) - 2140404..2140913 (-) 510 WP_003014221.1 helix-turn-helix domain-containing protein -
  SALIVB_RS11155 - 2141122..2141304 (+) 183 WP_041817300.1 hypothetical protein -
  SALIVB_RS09935 (SALIVB_2074) - 2141350..2142327 (+) 978 WP_013991293.1 replication initiation protein -
  SALIVB_RS09940 (SALIVB_2075) - 2142339..2142527 (+) 189 WP_000369785.1 DUF3173 domain-containing protein -
  SALIVB_RS09945 (SALIVB_2076) - 2142529..2143668 (+) 1140 WP_013991294.1 site-specific integrase -
  SALIVB_RS09955 (SALIVB_2078) rarA 2144110..2145378 (-) 1269 WP_002887077.1 replication-associated recombination protein A Machinery gene
  SALIVB_RS09960 (SALIVB_2079) rpmB 2145548..2145736 (+) 189 WP_002885786.1 50S ribosomal protein L28 -
  SALIVB_RS09965 (SALIVB_2080) - 2145863..2146129 (+) 267 WP_002885737.1 IreB family regulatory phosphoprotein -
  SALIVB_RS09970 (SALIVB_2081) ruvX 2146129..2146548 (+) 420 WP_002887078.1 Holliday junction resolvase RuvX -
  SALIVB_RS09975 (SALIVB_2082) - 2146655..2146960 (+) 306 WP_002887079.1 DUF1292 domain-containing protein -
  SALIVB_RS09980 (SALIVB_2083) - 2147172..2148818 (+) 1647 WP_013991296.1 membrane protein -

Sequence

Protein


Download         Length: 422 a.a.        Molecular weight: 46598.07 Da        Isoelectric Point: 5.8803

>NTDB_id=34260 SALIVB_RS09955 WP_002887077.1 2144110..2145378(-) (rarA) [Streptococcus salivarius CCHSS3]
MPDNLALRMRPRTISEVIGQKHLVGEGKIIRRMVEANMLSSMILYGPPGIGKTSIASAIAGTTKFAFRTFNATVDSKKRL
QEIAEEAKFSGGLVLLLDEIHRLDKAKQDFLLPLLENGNIIMIGATTENPFFSVTPAIRSRVQIFELEPLSNEDIKEAIL
GVLEDKERGFDFDVQLDEDALDFIATATNGDLRSAYNSLDLAVMSTLASEDGLRHITLDTVENSLQRSYITMDKDGDGHY
DVLSALQKSIRGSDVNASLHYAARLVEAGDLPSLARRLTVIAYEDIGLANPDAQVHTVTALEAAQKVGFPEARILIANVV
VDLALSPKSNSAYMAMDAALADLRKSGNLPIPRHLRDGHYAGSKELGNAQDYKYPHAYPEKWVKQQYLPDKLRGVNYFQP
NETGKYERALGANKERIDKLSR

Nucleotide


Download         Length: 1269 bp        

>NTDB_id=34260 SALIVB_RS09955 WP_002887077.1 2144110..2145378(-) (rarA) [Streptococcus salivarius CCHSS3]
ATGCCAGATAATCTTGCTCTACGCATGCGTCCACGTACAATTTCAGAGGTGATTGGTCAGAAGCATTTGGTTGGTGAAGG
TAAAATTATTCGCCGTATGGTAGAAGCGAATATGCTGTCGTCAATGATTCTCTACGGGCCACCAGGTATCGGGAAGACCT
CAATAGCTAGTGCTATTGCAGGAACAACAAAATTTGCTTTTAGAACCTTTAATGCTACTGTTGATAGCAAGAAACGCCTG
CAGGAAATTGCGGAAGAGGCTAAATTTTCAGGTGGCTTAGTTCTGCTTCTAGATGAGATTCATCGTTTGGATAAAGCTAA
ACAAGACTTTTTATTGCCACTCTTAGAGAATGGCAATATTATCATGATTGGGGCTACGACGGAGAATCCGTTTTTTTCTG
TCACACCAGCCATCCGTAGTCGTGTACAAATATTTGAGTTGGAACCACTCTCTAACGAGGATATTAAGGAAGCTATCCTA
GGTGTTCTAGAGGACAAGGAGCGTGGCTTTGACTTTGATGTCCAGTTAGATGAGGATGCTCTAGATTTTATTGCTACGGC
TACTAATGGTGATTTACGTTCGGCTTATAATTCCTTAGATTTAGCTGTCATGTCGACGCTAGCTTCAGAAGATGGGCTTC
GCCATATTACTTTAGATACAGTGGAAAATAGTTTACAACGTAGCTATATCACCATGGATAAAGACGGTGATGGACACTAT
GATGTACTTTCTGCTTTGCAAAAATCTATTCGAGGCTCTGATGTTAATGCCAGTCTTCACTATGCAGCACGTTTGGTTGA
AGCAGGAGATCTCCCTAGTCTAGCACGACGCTTGACTGTGATTGCGTACGAGGATATTGGTTTAGCTAATCCTGATGCGC
AAGTTCACACGGTTACAGCTTTGGAAGCTGCACAGAAAGTAGGTTTCCCAGAGGCGCGAATTTTGATTGCCAATGTAGTT
GTTGACTTAGCTTTATCTCCTAAGTCGAATTCGGCTTATATGGCTATGGATGCTGCCTTGGCAGACCTTAGAAAATCAGG
AAATTTACCGATTCCTCGTCATTTGAGAGATGGACACTATGCTGGAAGCAAGGAACTGGGCAATGCACAAGATTACAAGT
ATCCCCATGCTTATCCTGAAAAGTGGGTCAAACAACAATATCTTCCGGATAAATTAAGAGGTGTGAATTATTTCCAACCC
AATGAAACCGGAAAATATGAAAGAGCTCTTGGAGCTAATAAAGAACGGATCGATAAGTTATCTAGGTAA

Domains

Predicted by InterProScan.

MgsA AAA+ ATPase C terminal (MgsA_C)

(252-415)

ATPase family associated with various cellular activities (AAA) (AAA)

(42-144)

AAA C-terminal domain (AAA_assoc_2)

(173-251)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rarA Bacillus subtilis subsp. subtilis str. 168

60.143

99.289

0.597

Multiple sequence alignment