Detailed information NTG0034245

Bioinformatically predicted

Overview

• Name: recD/recD2/recDB
• Type: Machinery gene
• Locus tag: SALIVB_RS09090
• Genome accession: NC_015760
• Coordinates: 1985893..1988397 (+)
• Length: 834 a.a.
• NCBI ID: WP_013991199.1
• Uniprot ID: -
• Organism: Streptococcus salivarius CCHSS3
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1980893..1993397

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
SALIVB_RS09070 (SALIVB_1898)	-	1983130..1983672 (-)	543	WP_013991195.1	CvpA family protein	-
SALIVB_RS09075 (SALIVB_1899)	zapA	1983669..1983983 (-)	315	WP_004183554.1	cell division protein ZapA	-
SALIVB_RS09080 (SALIVB_1900)	rnhC	1984300..1985190 (+)	891	WP_041817282.1	ribonuclease HIII	-
SALIVB_RS09085 (SALIVB_1901)	lepB	1985209..1985832 (+)	624	WP_013991198.1	signal peptidase I	-
SALIVB_RS09090 (SALIVB_1902)	recD/recD2/recDB	1985893..1988397 (+)	2505	WP_013991199.1	ATP-dependent RecD-like DNA helicase	Machinery gene
SALIVB_RS09095 (SALIVB_1903)	-	1988449..1988775 (-)	327	WP_013991200.1	AzlD domain-containing protein	-
SALIVB_RS09100 (SALIVB_1904)	-	1988762..1989454 (-)	693	WP_013991201.1	AzlC family ABC transporter permease	-
SALIVB_RS09105 (SALIVB_1905)	tsaD	1989506..1990519 (-)	1014	WP_013991202.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	-
SALIVB_RS09110 (SALIVB_1906)	rimI	1990519..1990974 (-)	456	WP_041817283.1	ribosomal protein S18-alanine N-acetyltransferase	-
SALIVB_RS09115 (SALIVB_1907)	tsaB	1990934..1991620 (-)	687	WP_013991204.1	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex dimerization subunit type 1 TsaB	-
SALIVB_RS09120 (SALIVB_1908)	-	1991881..1992111 (+)	231	WP_002884752.1	DNA-dependent RNA polymerase subunit epsilon	-

Sequence

Protein

• Length: 834 a.a.
• Molecular weight: 93956.24 Da
• Isoelectric Point: 4.4515

>NTDB_id=34245 SALIVB_RS09090 WP_013991199.1 1985893..1988397(+) (recD/recD2/recDB) [Streptococcus salivarius CCHSS3]
MQEFYFSGTIERVIFENTSNFFRILLLEIDETDSDFEDYEIIVTGTMGDVMEGEDYTFWGQLTNHPKYGEQLQMTRYERS
KPSASGLIKYFASDNFKGIGKKTAERIVEIYGEDPIDKILEDPSELEQIPNLSKVNREAFVAKLKINYGAEQILSKLSSY
GLTPKAASQIFNQYKEESLNLIEEHPYLLVEEIQGIGFKMADQLAERLGIASDAPERLRAALIHCLLEASMEEGDTYIEA
KALLERTIILLESARPIELDPALVANQLTNLIQEDKVQNVETKIFDNTLYFAEQGIYTHLTRIMKDQPDVSSEDKILDSL
EGVEEELGITYDQVQKDAIIKALQSKVFILTGGPGTGKTTVINGIIKTYADLHGLDFKKSDLPIILAAPTGRAARRMNEL
TQLPSATIHRHLGLNSEDDFKTLEDYLDCDLIIIDEFSMVDTWLANQLFESISDSTQVIIVGDQDQLPSVGPGQVLADLL
QIDNLPKVSLTKIFRQSEDSTIVTLASRMRQGQLPADFTEKKADRSYFEANANHIPQMVPKIVSAAIKSGIAAQDVQILA
PMYRGQAGINNLNTIMQDLLNPQEKANQFAFNDIFFRKNDKILHLVNDTELNVFNGDIGIITDLIPGKYTESKQDEIYMS
FDGNEVIYPRNEWNKITLAYAMSIHKSQGSEFPVVILPITRQSGRMLQRNLIYTAITRAKSKLVMLGEIAAFDYAVRNEG
AKRNTYLIQRFEQTYTQAVDKSVEKIVKNKATDASNQTKTKNNDPSETLENKAFSENINPSPDLVNTYSQPVDKSVNKPV
QTEENYRLTEENWATIDPMIGLSEDDIAAFFNNN

Nucleotide

• Length: 2505 bp

>NTDB_id=34245 SALIVB_RS09090 WP_013991199.1 1985893..1988397(+) (recD/recD2/recDB) [Streptococcus salivarius CCHSS3]
ATGCAAGAATTTTATTTTTCAGGAACTATCGAACGCGTCATTTTCGAAAACACTAGTAATTTTTTTCGTATCTTACTCTT
AGAGATTGACGAAACGGACAGTGATTTTGAAGACTACGAAATCATTGTCACAGGAACTATGGGGGATGTCATGGAGGGTG
AAGACTATACCTTCTGGGGCCAACTAACCAATCACCCTAAATATGGGGAACAGCTACAAATGACCCGCTACGAGCGTTCA
AAACCTTCTGCCAGCGGTCTTATCAAATATTTTGCCAGCGACAATTTCAAAGGAATCGGTAAGAAAACGGCCGAGCGTAT
TGTCGAAATTTACGGAGAAGACCCTATTGACAAGATTCTCGAGGATCCTAGCGAGTTAGAGCAGATTCCCAACCTATCCA
AGGTCAATCGAGAAGCCTTTGTTGCTAAGTTAAAAATCAATTATGGAGCCGAGCAAATCCTGTCCAAACTTTCTAGCTAT
GGCCTCACACCAAAGGCCGCCTCACAAATTTTCAACCAATATAAGGAAGAGTCACTAAATCTTATTGAGGAACACCCTTA
TCTATTAGTAGAGGAGATTCAAGGAATCGGTTTTAAAATGGCCGACCAACTAGCTGAACGTCTTGGAATTGCTAGTGATG
CCCCTGAGCGTTTACGAGCAGCCTTGATTCATTGTCTACTAGAAGCCAGTATGGAAGAAGGCGATACCTACATAGAAGCC
AAAGCCTTGCTTGAACGGACCATCATTCTTTTGGAAAGTGCTCGTCCGATTGAACTTGACCCCGCCTTGGTCGCTAACCA
ATTAACCAATCTTATCCAAGAGGATAAGGTGCAAAATGTAGAGACTAAAATCTTTGATAATACCCTATATTTTGCGGAAC
AGGGCATCTATACCCACCTAACTCGTATCATGAAGGACCAACCTGATGTCAGCTCTGAAGACAAAATATTAGACAGCCTT
GAAGGGGTGGAAGAGGAGCTTGGTATTACTTATGATCAGGTTCAAAAAGATGCCATTATCAAAGCCCTACAAAGCAAGGT
CTTCATCCTGACAGGTGGTCCCGGAACAGGGAAAACCACTGTTATTAACGGCATTATTAAAACCTATGCTGACCTTCATG
GTCTAGATTTCAAAAAGTCTGATTTGCCTATTATTTTAGCGGCGCCAACGGGACGGGCTGCTCGTCGAATGAACGAACTC
ACCCAACTCCCTAGCGCCACTATCCATAGACATTTGGGCCTCAATAGCGAGGACGATTTCAAGACCTTAGAGGACTATCT
CGATTGCGACTTGATTATCATCGATGAGTTTTCTATGGTTGATACTTGGTTGGCTAATCAACTTTTTGAAAGTATCTCTG
ATTCAACCCAAGTCATCATTGTGGGTGACCAAGACCAACTGCCTTCCGTAGGCCCTGGCCAAGTCTTGGCTGACCTTTTG
CAGATTGATAACTTGCCAAAGGTTTCCCTAACCAAAATTTTCAGACAATCCGAGGACTCCACCATCGTTACCCTGGCTAG
TCGGATGCGCCAAGGCCAACTACCCGCTGATTTCACAGAGAAAAAGGCTGACCGCTCTTACTTTGAGGCCAATGCCAACC
ATATTCCACAGATGGTTCCTAAAATTGTCTCTGCCGCTATAAAGAGCGGGATCGCTGCTCAGGATGTGCAGATTCTAGCT
CCCATGTATCGAGGACAGGCTGGTATTAACAATCTCAATACCATTATGCAGGACCTACTTAATCCTCAAGAAAAGGCCAA
TCAGTTTGCCTTTAATGATATTTTCTTCCGTAAGAACGACAAAATTCTCCATCTGGTCAACGATACCGAACTCAATGTCT
TCAATGGCGACATCGGCATCATTACCGATCTCATCCCTGGTAAATATACTGAAAGCAAGCAGGACGAAATTTACATGTCC
TTTGATGGCAATGAGGTTATCTATCCTCGTAACGAATGGAATAAGATTACTCTGGCCTATGCCATGTCAATCCACAAATC
TCAAGGGAGTGAGTTCCCAGTCGTTATCCTTCCCATCACACGACAAAGTGGACGTATGCTACAACGTAACCTCATCTACA
CCGCTATCACACGCGCCAAGAGTAAACTAGTCATGTTAGGGGAAATCGCAGCCTTTGATTATGCCGTTCGCAACGAAGGA
GCTAAACGAAATACTTATCTCATCCAACGTTTTGAACAAACTTATACACAAGCTGTTGATAAGTCTGTCGAAAAGATTGT
TAAAAACAAGGCAACAGACGCCTCCAATCAAACAAAAACGAAAAACAACGACCCCTCAGAAACCCTTGAAAACAAAGCCT
TTTCGGAAAATATCAATCCATCCCCAGATCTTGTTAACACTTATTCACAACCTGTGGATAAGTCTGTTAACAAACCTGTG
CAAACAGAAGAAAACTATCGTTTAACTGAAGAAAATTGGGCAACTATAGATCCAATGATTGGTCTCAGTGAAGACGATAT
TGCTGCCTTTTTTAACAATAACTAA

Domains

Predicted by InterProScan.

• UvrD-like helicase C-terminal domain (UvrD_C_2) (659-705)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (572-638)

• AAA domain (AAA_30) (331-523)

• Helix-hairpin-helix containing domain (HHH_RecD2) (148-237)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD/recD2/recDB	Bacillus subtilis subsp. subtilis str. 168	44.846	89.568	0.402