Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SALIVB_RS08395 Genome accession   NC_015760
Coordinates   1837048..1837833 (-) Length   261 a.a.
NCBI ID   WP_002884784.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1832048..1842833
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS08365 (SALIVB_1745) gatC 1832138..1832440 (-) 303 WP_002884769.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SALIVB_RS10665 (SALIVB_1746) - 1832580..1833020 (-) 441 Protein_1624 glycosyltransferase -
  SALIVB_RS08375 (SALIVB_1747) - 1833041..1834480 (-) 1440 WP_013991091.1 6-phospho-beta-glucosidase -
  SALIVB_RS08380 (SALIVB_1748) - 1834626..1835240 (-) 615 WP_041817392.1 GyrI-like domain-containing protein -
  SALIVB_RS08385 (SALIVB_1749) - 1835303..1836202 (-) 900 WP_013991093.1 helix-turn-helix transcriptional regulator -
  SALIVB_RS08390 (SALIVB_1750) - 1836431..1836982 (-) 552 WP_004183314.1 cysteine hydrolase family protein -
  SALIVB_RS08395 (SALIVB_1751) codY 1837048..1837833 (-) 786 WP_002884784.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SALIVB_RS08400 (SALIVB_1752) - 1838101..1839315 (-) 1215 WP_013991094.1 pyridoxal phosphate-dependent aminotransferase -
  SALIVB_RS08405 (SALIVB_1753) - 1839675..1840127 (+) 453 WP_002891687.1 universal stress protein -
  SALIVB_RS08410 (SALIVB_1754) - 1840209..1840961 (-) 753 WP_013991095.1 hypothetical protein -
  SALIVB_RS08415 (SALIVB_1755) pflA 1841031..1841831 (-) 801 WP_013991096.1 pyruvate formate-lyase-activating protein -
  SALIVB_RS08420 (SALIVB_1756) - 1842018..1842689 (-) 672 WP_013991097.1 LPXTG cell wall anchor domain-containing protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28829.85 Da        Isoelectric Point: 4.3715

>NTDB_id=34234 SALIVB_RS08395 WP_002884784.1 1837048..1837833(-) (codY) [Streptococcus salivarius CCHSS3]
MANLLAKTRKITSILQRSVDSLEGDLPYNNMAAQLADIIDCNAAIVNGGGALLGFAMKYKTNNDRVEEFFEAKQLPEEYT
RGISRVYDTQENIGIDSDLTIFPVESKDDFPDGLTTIAPIYGGGMRLGSFIIWRNDHDFVDEDLILVEIASTVVGLQLLN
LQTENLEETIRKQTAINMAINTLSYSEIKAVSAILNELDGLEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVLNEGIYDKLKEYE

Nucleotide


Download         Length: 786 bp        

>NTDB_id=34234 SALIVB_RS08395 WP_002884784.1 1837048..1837833(-) (codY) [Streptococcus salivarius CCHSS3]
ATGGCAAATTTGCTGGCTAAAACACGTAAAATTACATCTATCTTGCAACGCTCAGTAGATAGCTTGGAAGGAGATCTTCC
ATACAACAACATGGCTGCTCAATTGGCGGATATCATTGATTGTAACGCTGCTATCGTTAATGGTGGTGGTGCTCTCCTTG
GTTTTGCCATGAAGTACAAAACCAACAATGATCGTGTGGAAGAGTTTTTTGAAGCCAAACAACTTCCAGAAGAATACACA
CGTGGTATCAGCCGTGTTTATGACACTCAAGAAAACATTGGTATTGACAGTGATTTGACCATTTTCCCTGTGGAATCAAA
AGATGACTTCCCAGATGGTTTGACTACAATTGCTCCTATCTATGGTGGTGGTATGCGTCTTGGTTCTTTCATCATTTGGC
GTAACGACCATGATTTTGTGGATGAAGATCTTATCTTGGTTGAGATTGCCTCTACAGTAGTTGGGTTGCAGTTGTTGAAC
CTTCAAACAGAGAACTTGGAAGAAACAATTCGTAAACAAACAGCTATTAACATGGCTATTAATACCTTGTCTTACTCAGA
AATCAAGGCAGTTTCAGCTATCTTGAATGAGTTGGACGGTTTGGAAGGTCGCTTGACAGCGTCTGTTATCGCTGACCGTA
TCGGAATTACACGTTCAGTTATCGTTAATGCCCTTCGTAAGTTGGAATCAGCTGGTATTATTGAGAGCCGTTCACTCGGT
ATGAAAGGGACTTATCTTAAAGTCCTTAACGAAGGTATCTACGATAAATTGAAAGAATACGAATAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(3-182)

CodY helix-turn-helix domain (HTH_CodY)

(201-261)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

64.981

98.467

0.64
  codY Bacillus subtilis subsp. subtilis str. 168

53.036

94.636

0.502