Detailed information NTG0342297

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: BACIH_RS12415
• Genome accession: NZ_CP044360
• Coordinates: 2531311..2532579 (+)
• Length: 422 a.a.
• NCBI ID: WP_012118079.1
• Uniprot ID: A7Z748
• Organism: Bacillus amyloliquefaciens strain V167
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2526311..2537579

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
BACIH_RS12395 (BACIH_2531)	-	2527682..2528302 (-)	621	WP_088461189.1	lipopolysaccharide assembly protein LapB	-
BACIH_RS12400 (BACIH_2532)	mnmA	2528390..2529505 (-)	1116	WP_012118077.1	tRNA 2-thiouridine(34) synthase MnmA	-
BACIH_RS12405 (BACIH_2533)	-	2529542..2530681 (-)	1140	WP_012118078.1	cysteine desulfurase family protein	-
BACIH_RS12410 (BACIH_2534)	cymR	2530700..2531116 (-)	417	WP_003152730.1	cysteine metabolism transcriptional regulator CymR	-
BACIH_RS12415 (BACIH_2536)	rarA	2531311..2532579 (+)	1269	WP_012118079.1	replication-associated recombination protein A	Machinery gene
BACIH_RS12420 (BACIH_2537)	-	2532696..2533460 (-)	765	WP_012118080.1	ThiF family adenylyltransferase	-
BACIH_RS12430 (BACIH_2538)	aspS	2533786..2535564 (-)	1779	WP_012118081.1	aspartate--tRNA ligase	-
BACIH_RS12435 (BACIH_2539)	hisS	2535579..2536853 (-)	1275	WP_012118082.1	histidine--tRNA ligase	-
BACIH_RS19635 (BACIH_2540)	-	2537210..2537380 (-)	171	WP_012118083.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46675.54 Da
• Isoelectric Point: 7.9149

>NTDB_id=342297 BACIH_RS12415 WP_012118079.1 2531311..2532579(+) (rarA) [Bacillus amyloliquefaciens strain V167]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALER
ALTDEHRGLGSYSVSVDDDAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKNGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRTGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPEPLKNKQYYKP
KQTGKFEAAIKQVYEKLMKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=342297 BACIH_RS12415 WP_012118079.1 2531311..2532579(+) (rarA) [Bacillus amyloliquefaciens strain V167]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAGGATAA
AATCATCGGCAGAATGGTGCGTGCAAAGCACTTATCATCCATGATCCTGTACGGACCGCCGGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGGAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAG
ATTGTCGTACAGGAAGCGAAAATGTCAGGCCAGGTCATTTTAATCCTTGACGAAGTGCACAGGCTTGATAAGGGAAAGCA
GGATTTTCTGCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAACCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGGACCCAGATATTTGAGCTTGAACCGTTAACACCCGATCTGATCAAGCAGGCATTGGAAAGA
GCGCTCACAGATGAACACCGGGGGCTCGGTTCCTACAGCGTTTCGGTGGACGACGACGCGATGGATCATTTCGCGCAAGG
GTGCGGAGGAGACGTCCGCTCAGCTTTGAACGCACTTGAGCTTGCCGTCCTCTCCACAAAGGAATCAAGCGACGGCACGA
TCCGGATTACACGGGAGACGGCGGAAGAATGTCTGCAGAAAAAAAGCTATACTCATGATAAAAACGGTGATGCGCATTAT
GACGTCTTATCCGCCTTCCAAAAATCGATCCGAGGCTCGGACGCAAACGCCGCCCTTCATTATCTGGCCCGTCTGATCGA
AGCCGGCGACCTTGAAAGCATATCAAGAAGGCTTCTCGTGATCGCCTATGAAGATATCGGCCTCGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAACGGATCGGCTTTCCGGAAGCGAGAATTCCGCTGGCCAATGCGGTA
ATCGAATTATGCCTCTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAGGCGCTCAAAGACATCAGGACAGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGGGCCCAAGAGCTCGGACGCGGGATCGGCTATCAAT
ATCCTCACGATTTCGAGAACGGATGGGTCGAACAGCAATATTTGCCTGAACCGTTAAAAAACAAGCAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGATGAAGCAGAAAAAATAA

Domains

Predicted by InterProScan.

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

3D structure

• AlphaFold DB: A7Z748

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.974	99.763	0.908