Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   SALIVB_RS07440 Genome accession   NC_015760
Coordinates   1642514..1644250 (-) Length   578 a.a.
NCBI ID   WP_013990979.1    Uniprot ID   -
Organism   Streptococcus salivarius CCHSS3     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1637514..1649250
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVB_RS07420 (SALIVB_1546) - 1637546..1638529 (-) 984 WP_013990975.1 rhodanese-related sulfurtransferase -
  SALIVB_RS07425 (SALIVB_1549) - 1638719..1639420 (-) 702 WP_013990976.1 glucosamine-6-phosphate deaminase -
  SALIVB_RS07430 (SALIVB_1550) queA 1639573..1640616 (+) 1044 WP_013990977.1 tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA -
  SALIVB_RS07435 (SALIVB_1551) rcrQ 1640714..1642501 (-) 1788 WP_013990978.1 ABC transporter ATP-binding protein Regulator
  SALIVB_RS07440 (SALIVB_1552) rcrP 1642514..1644250 (-) 1737 WP_013990979.1 ABC transporter ATP-binding protein Regulator
  SALIVB_RS11045 - 1644450..1644605 (-) 156 Protein_1439 LysR family transcriptional regulator -
  SALIVB_RS07450 (SALIVB_1554) - 1644615..1646168 (-) 1554 WP_013990980.1 BCCT family transporter -
  SALIVB_RS11095 (SALIVB_1555) - 1646285..1646407 (-) 123 WP_002269975.1 hypothetical protein -
  SALIVB_RS07455 (SALIVB_1556) rplL 1646616..1646984 (-) 369 WP_004183006.1 50S ribosomal protein L7/L12 -
  SALIVB_RS07460 (SALIVB_1557) rplJ 1647059..1647562 (-) 504 WP_003095623.1 50S ribosomal protein L10 -
  SALIVB_RS07465 (SALIVB_1558) - 1647855..1649063 (-) 1209 WP_013990981.1 ABC transporter permease -

Sequence

Protein


Download         Length: 578 a.a.        Molecular weight: 64800.67 Da        Isoelectric Point: 5.2976

>NTDB_id=34225 SALIVB_RS07440 WP_013990979.1 1642514..1644250(-) (rcrP) [Streptococcus salivarius CCHSS3]
MAYIWSYLRRYPKWLAMNFTAAILFVIANLGLPTVLARMIDEGINRGDVDKLYAYAWVMFGVVLTGIVGRILLSYAVGKL
TTTMVQVMRNDIYAKLQEYSHHEYEQIGVSSLVTRITSDAFVLMQFADQLLKLGVITPLMMVSSVFLILTTSPSLAWIVA
ISLPFLAVVVWYVAVKTRPLSEKQQATLDKINQYARENLTGLRVIRAFAREDFQEKKFASENAVYADNSNKLFKLTGLTE
PLFVQIIIAMIVAIVWFALEPLGSGTLAIGDLVAFIEYSFHALLSFLFLANLFTMYPRTAVSSERLQEIMDMPISINPNE
DGVTETDTKGYLEFDNVTFAYPGETESPVLHNISFKAKPGETIAFIGSTGSGKSSLVQLIPRFYDVTLGRILVDGVDVRD
YNLKALRRKIGFIPQKALLFTGTIGENIRYGKENASHEELNQATDVAQAKEFIESKEERYDSHLAEGGSNLSGGQKQRLS
IARAVVKRPDLYIFDDSFSALDYKTDATLRRRLKEVTQDATVLIVAQRVGTIMDADQIIVLDEGEIVGRGRHEELMESND
IYREIANSQLNQKSLTED

Nucleotide


Download         Length: 1737 bp        

>NTDB_id=34225 SALIVB_RS07440 WP_013990979.1 1642514..1644250(-) (rcrP) [Streptococcus salivarius CCHSS3]
ATGGCTTATATTTGGTCTTATCTCAGACGTTATCCTAAGTGGCTAGCAATGAATTTTACGGCAGCCATTTTATTTGTTAT
TGCTAACTTGGGTTTGCCGACGGTTCTTGCCAGAATGATTGATGAGGGAATAAACCGTGGTGATGTTGATAAGCTTTACG
CTTATGCTTGGGTCATGTTTGGTGTAGTTTTGACTGGGATTGTTGGTCGTATACTTCTGTCCTATGCGGTTGGTAAATTG
ACCACTACTATGGTGCAAGTCATGCGTAATGACATTTATGCTAAGCTTCAGGAGTATTCCCACCACGAGTATGAGCAGAT
TGGGGTATCCTCTTTGGTGACTCGTATTACATCAGATGCTTTTGTGCTTATGCAGTTTGCGGATCAACTTCTTAAGCTAG
GGGTTATCACTCCTTTGATGATGGTTTCCAGTGTCTTCTTGATTTTGACGACAAGTCCATCTTTGGCTTGGATTGTGGCA
ATCTCCTTACCTTTCCTAGCCGTAGTTGTCTGGTATGTGGCAGTAAAGACTCGTCCGCTTTCTGAAAAGCAACAGGCAAC
TCTCGACAAGATTAACCAGTATGCTCGTGAAAATCTGACTGGACTTCGTGTCATCCGTGCTTTCGCTAGAGAAGATTTTC
AAGAGAAGAAGTTCGCTTCTGAAAATGCTGTCTATGCGGATAATTCAAACAAACTTTTTAAATTGACTGGTTTGACCGAG
CCACTTTTTGTGCAAATCATCATAGCCATGATTGTGGCAATTGTTTGGTTTGCTCTTGAGCCATTAGGTTCTGGGACTTT
AGCAATCGGTGACTTGGTTGCCTTTATTGAGTACAGCTTCCATGCACTATTGTCCTTCCTTTTCCTAGCTAATCTTTTTA
CCATGTATCCTCGTACAGCGGTATCTAGTGAACGTCTGCAGGAAATTATGGACATGCCGATTTCTATCAATCCAAATGAA
GATGGCGTAACAGAGACTGATACTAAGGGATATTTGGAATTTGATAATGTGACTTTTGCCTATCCTGGTGAGACGGAAAG
TCCTGTCCTACACAATATTTCTTTCAAGGCAAAACCTGGTGAAACCATTGCCTTTATTGGGTCTACGGGTTCAGGAAAAT
CATCACTTGTACAGTTGATTCCACGCTTTTATGATGTAACACTTGGACGCATTCTTGTTGATGGTGTAGATGTCCGTGAC
TACAATCTTAAGGCTCTTCGTCGTAAGATTGGCTTTATTCCACAAAAAGCCCTACTCTTTACAGGGACTATCGGTGAAAA
TATCCGTTATGGTAAGGAAAATGCCAGTCATGAAGAATTGAATCAAGCTACTGATGTGGCTCAAGCCAAGGAATTTATCG
AAAGTAAGGAAGAACGCTATGATTCTCACTTGGCTGAGGGTGGTAGCAACCTTTCTGGTGGACAGAAGCAGCGTTTGTCA
ATTGCACGTGCGGTGGTTAAACGTCCTGATCTTTATATCTTTGATGATTCCTTCTCTGCCTTGGACTACAAGACTGATGC
GACCTTGCGCCGTCGTCTAAAAGAAGTGACTCAAGATGCGACAGTCCTGATTGTAGCCCAACGTGTGGGAACTATCATGG
ATGCTGATCAAATCATTGTTTTGGATGAAGGTGAAATCGTTGGTCGTGGCCGTCATGAAGAGCTTATGGAAAGCAATGAC
ATTTACCGTGAAATTGCTAATTCACAATTGAATCAAAAGAGTCTTACGGAAGACTAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(17-279)

ABC transporter (ABC_tran)

(350-497)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.434

91.696

0.362

Multiple sequence alignment