Detailed information NTG0342174

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: F7G16_RS07080
• Genome accession: NZ_CP044352
• Coordinates: 1573711..1575072 (+)
• Length: 453 a.a.
• NCBI ID: WP_011097739.1
• Uniprot ID: -
• Organism: Xylella fastidiosa strain ATCC 35879
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1568711..1580072

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
F7G16_RS07070 (F7G16_07345)	-	1570472..1572382 (+)	1911	WP_004089128.1	DUF3857 domain-containing transglutaminase family protein	-
F7G16_RS07075 (F7G16_07350)	lolA	1572944..1573570 (+)	627	WP_004089126.1	outer membrane lipoprotein chaperone LolA	-
F7G16_RS07080 (F7G16_07355)	rarA	1573711..1575072 (+)	1362	WP_011097739.1	replication-associated recombination protein A	Machinery gene
F7G16_RS07085 (F7G16_07360)	crcB	1575233..1575634 (+)	402	WP_004089119.1	fluoride efflux transporter CrcB	-
F7G16_RS07090 (F7G16_07365)	-	1576308..1577804 (+)	1497	WP_004089113.1	ATP-binding protein	-
F7G16_RS07095 (F7G16_07370)	folK	1577929..1578453 (+)	525	WP_038231892.1	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	-
F7G16_RS07100 (F7G16_07375)	-	1578464..1579201 (-)	738	WP_004089106.1	pteridine reductase	-

Sequence

Protein

• Length: 453 a.a.
• Molecular weight: 50554.75 Da
• Isoelectric Point: 6.7781

>NTDB_id=342174 F7G16_RS07080 WP_011097739.1 1573711..1575072(+) (rarA) [Xylella fastidiosa strain ATCC 35879]
MTRQRFPTLQHDLLGVAPLLQPLAERMRPRTLHEMVGQKRLLDPDRALHRAVASGHVHSMILWGPPGCGKTTLSLLLAHY
IDAEFRSVSAVLSGLPEVRQILADAAQRFSEGRRTVLFVDEVHRFNKMQQDAFLPHIERGSIIFVGATTENPSFELNSAL
LSRCRVHVLEAVSSQDIVVALQRALQDTERGLGGQKIEVSQASLLEIAKAADGDVRRALTLLEIAAELAQDEQITADLLS
QVLADRSRRFDKRGEQFYDQISALHKSVRSSNPDAALYWLLRMLDGGCDPIYLARRLTRIAIEDIGLADPRAQSMALEAW
DIYERLGSPEGDLAFAQLVLYLASTAKSNAGYVAFNVAKEDIRQTGTQDVPLHLRNAPTRLMKSLGYGIEYQYDHDAENG
VALEQTCFPDALGERIYYQPVSRGLEIKLKEKLDWLRAARAQIQADKPQPPRA

Nucleotide

• Length: 1362 bp

>NTDB_id=342174 F7G16_RS07080 WP_011097739.1 1573711..1575072(+) (rarA) [Xylella fastidiosa strain ATCC 35879]
GTGACACGACAGCGCTTTCCGACTCTTCAGCATGATTTGCTTGGTGTGGCTCCTCTCTTGCAGCCACTGGCCGAGCGCAT
GCGTCCTCGTACTCTTCATGAGATGGTAGGACAGAAGCGCTTGCTTGACCCAGATCGTGCATTGCATCGTGCGGTTGCTT
CCGGGCATGTGCATTCCATGATTTTGTGGGGACCGCCAGGGTGCGGCAAGACGACATTGTCATTGCTGTTAGCGCATTAC
ATTGATGCAGAATTTCGGTCAGTCTCGGCTGTTCTTTCGGGGTTGCCGGAGGTGCGTCAGATCTTGGCTGACGCTGCGCA
GCGTTTTTCTGAAGGACGCCGCACCGTCTTGTTCGTGGACGAAGTGCATCGTTTTAACAAGATGCAGCAGGATGCGTTTC
TGCCGCATATCGAGCGTGGTTCCATTATTTTCGTTGGTGCCACTACTGAGAATCCATCCTTCGAATTGAACTCGGCGTTA
CTGTCGCGTTGCCGTGTCCACGTGTTGGAGGCAGTGTCGTCACAGGATATTGTTGTGGCATTGCAGCGGGCGTTGCAGGA
TACGGAGCGGGGTTTGGGTGGGCAGAAGATTGAAGTGTCTCAAGCCTCTCTGTTGGAGATTGCCAAGGCTGCAGATGGTG
ACGTGCGTCGTGCGCTCACCTTGTTGGAGATTGCTGCTGAGCTTGCCCAGGATGAGCAGATAACCGCTGACTTGCTTTCG
CAAGTGCTTGCCGATCGTAGTCGGCGCTTCGACAAACGGGGGGAGCAGTTCTATGACCAGATTTCGGCCTTGCACAAGAG
TGTACGTAGTTCCAACCCGGATGCGGCATTGTATTGGTTGCTGCGTATGCTGGATGGTGGTTGTGATCCTATCTACTTGG
CCCGGCGCTTGACCCGCATAGCGATTGAGGATATTGGTTTGGCTGATCCGCGTGCACAGTCGATGGCTCTGGAGGCTTGG
GATATCTATGAGCGGTTGGGTAGCCCGGAGGGAGATCTGGCGTTCGCGCAGTTGGTGCTGTACTTGGCAAGTACAGCAAA
ATCGAATGCTGGCTATGTTGCGTTCAATGTGGCCAAGGAGGACATTCGCCAGACGGGTACTCAGGATGTTCCGCTACATC
TGCGCAATGCACCGACCAGACTCATGAAAAGTCTCGGTTACGGTATCGAGTATCAGTACGATCATGATGCTGAGAACGGT
GTTGCGCTGGAACAGACTTGTTTTCCCGATGCGCTGGGGGAGCGTATTTACTATCAACCGGTATCCCGCGGTCTGGAGAT
TAAGCTGAAGGAGAAGTTGGACTGGTTGCGTGCAGCACGTGCTCAGATTCAAGCGGATAAGCCGCAGCCGCCGCGTGCAT
AG

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (194-269)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (27-146)

• MgsA AAA+ ATPase C terminal (MgsA_C) (271-436)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	39.243	93.377	0.366