Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   F7D05_RS04925 Genome accession   NZ_CP044312
Coordinates   1032493..1033098 (+) Length   201 a.a.
NCBI ID   WP_001195025.1    Uniprot ID   P0A7H7
Organism   Escherichia coli strain RM13745     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1027493..1038098
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F7D05_RS27005 - 1028047..1028145 (+) 99 Protein_967 hypothetical protein -
  F7D05_RS04895 (F7D05_04980) rsmS 1028198..1028359 (-) 162 WP_001460555.1 pleiotropic regulatory protein RsmS -
  F7D05_RS04900 (F7D05_04985) priC 1028373..1028900 (-) 528 WP_000844848.1 primosomal replication protein N'' -
  F7D05_RS04905 (F7D05_04990) ybaN 1028970..1029347 (+) 378 WP_001188905.1 DUF454 family protein -
  F7D05_RS04910 (F7D05_04995) apt 1029500..1030051 (+) 552 WP_000127356.1 adenine phosphoribosyltransferase -
  F7D05_RS04915 (F7D05_05000) dnaX 1030180..1032111 (+) 1932 WP_050938760.1 DNA polymerase III subunit gamma/tau -
  F7D05_RS04920 (F7D05_05005) ybaB 1032164..1032493 (+) 330 WP_000467098.1 YbaB/EbfC family nucleoid-associated protein -
  F7D05_RS04925 (F7D05_05010) recR 1032493..1033098 (+) 606 WP_001195025.1 recombination mediator RecR Machinery gene
  F7D05_RS04930 (F7D05_05015) htpG 1033208..1035082 (+) 1875 WP_001704251.1 molecular chaperone HtpG -
  F7D05_RS04935 (F7D05_05020) adk 1035263..1035907 (+) 645 WP_001220233.1 adenylate kinase -
  F7D05_RS04940 (F7D05_05025) hemH 1036039..1037001 (+) 963 WP_001250088.1 ferrochelatase -
  F7D05_RS04945 (F7D05_05030) aes 1036998..1037957 (-) 960 WP_050938759.1 acetyl esterase -

Sequence

Protein


Download         Length: 201 a.a.        Molecular weight: 21963.00 Da        Isoelectric Point: 4.9097

>NTDB_id=341840 F7D05_RS04925 WP_001195025.1 1032493..1033098(+) (recR) [Escherichia coli strain RM13745]
MQTSPLLTQLMEALRCLPGVGPKSAQRMAFTLLQRDRSGGMRLAQALTRAMSEIGHCADCRTFTEQEVCNICSNPRRQEN
GQICVVESPADIYAIEQTGQFSGRYFVLMGHLSPLDGIGPDDIGLDRLEQRLAEEKITEVILATNPTVEGEATANYIAEL
CAQYDVEASRIAHGVPVGGELEMVDGTTLSHSLAGRHKIRF

Nucleotide


Download         Length: 606 bp        

>NTDB_id=341840 F7D05_RS04925 WP_001195025.1 1032493..1033098(+) (recR) [Escherichia coli strain RM13745]
ATGCAAACCAGCCCGCTGTTAACACAGCTTATGGAAGCACTGCGCTGTCTGCCGGGCGTTGGCCCGAAGTCGGCGCAGCG
TATGGCGTTCACGCTGCTTCAGCGCGATCGTAGCGGCGGGATGCGTCTGGCGCAGGCGCTCACCCGGGCGATGTCGGAAA
TCGGCCACTGCGCCGATTGCCGCACTTTCACCGAACAGGAAGTCTGTAACATCTGTTCGAATCCGCGTCGTCAGGAAAAC
GGTCAAATCTGCGTGGTGGAGAGTCCGGCGGACATCTACGCCATTGAGCAGACGGGGCAGTTTTCTGGTCGTTATTTTGT
GTTGATGGGGCATCTGTCACCGCTGGACGGCATCGGTCCGGATGATATCGGGCTTGATCGTCTGGAACAGCGTCTGGCAG
AGGAAAAAATCACTGAAGTGATCCTCGCCACCAACCCCACGGTTGAAGGTGAAGCTACCGCTAACTACATTGCCGAGCTT
TGCGCGCAATATGACGTGGAAGCCAGCCGAATCGCTCATGGCGTACCGGTTGGCGGCGAACTGGAAATGGTCGATGGCAC
CACGCTGTCACACTCCCTTGCCGGGCGTCATAAGATTCGTTTTTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(41-77)

Toprim domain (Toprim_4)

(81-172)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P0A7H7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

45.226

99.005

0.448
  recR Bacillus subtilis subsp. subtilis str. 168

44.724

99.005

0.443

Multiple sequence alignment