Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   SGPB_RS09030 Genome accession   NC_015600
Coordinates   1830312..1832648 (-) Length   778 a.a.
NCBI ID   WP_013852247.1    Uniprot ID   F5X3C4
Organism   Streptococcus pasteurianus ATCC 43144     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1825312..1837648
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS09005 (SGPB_1765) trxA 1825733..1826047 (-) 315 WP_013852243.1 thioredoxin -
  SGPB_RS09010 (SGPB_1766) - 1826287..1826784 (+) 498 WP_003066443.1 phosphatase PAP2 family protein -
  SGPB_RS09015 (SGPB_1767) nadC 1826864..1827724 (-) 861 WP_013852244.1 carboxylating nicotinate-nucleotide diphosphorylase -
  SGPB_RS09020 (SGPB_1768) - 1827752..1829056 (-) 1305 WP_013852245.1 L-aspartate oxidase -
  SGPB_RS09025 (SGPB_1769) nadA 1829293..1830213 (+) 921 WP_013852246.1 quinolinate synthase NadA -
  SGPB_RS09030 (SGPB_1770) mutS/mutS2 1830312..1832648 (-) 2337 WP_013852247.1 endonuclease MutS2 Machinery gene
  SGPB_RS09035 (SGPB_1771) - 1832754..1833302 (-) 549 WP_003066448.1 CvpA family protein -
  SGPB_RS09040 (SGPB_1772) zapA 1833305..1833613 (-) 309 WP_003066449.1 cell division protein ZapA -
  SGPB_RS09045 (SGPB_1773) rnhC 1833735..1834637 (+) 903 WP_013852248.1 ribonuclease HIII -
  SGPB_RS09050 (SGPB_1774) lepB 1834654..1835247 (+) 594 WP_003066451.1 signal peptidase I -
  SGPB_RS09055 (SGPB_1775) - 1835375..1837568 (+) 2194 Protein_1785 ATP-dependent RecD-like DNA helicase -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87827.26 Da        Isoelectric Point: 6.3770

>NTDB_id=34128 SGPB_RS09030 WP_013852247.1 1830312..1832648(-) (mutS/mutS2) [Streptococcus pasteurianus ATCC 43144]
MNNRILEQLEFDKVKQLFAGYLQTEQGQDELRKLEPMTEPDRISRSFDEMSDMEQIFIEHHSFGMGSLRDISESMRRLEL
DADVNISEIIDIKKVLQVSAEIKHFYNDLENVELSALNTLFEKIELLPSLQGSLQAINDGGFIENFASSELDRIRRQINH
DEGRVRQILQDILKKQADHLTETLIASRNGRAVLPVKNSYRNRISGVVHDISASGSTVYIEPRAVVQLNEEITQLRADER
HEMARILRELSNMLRPHTNIIRNNAWVLGHLDFVRAKFLFMQENNAIVPQLSADKTVQLLQARHPLLTDPVANDLHFLNE
LTVIVITGPNTGGKTVMLKTLGLAQLMAQSGLPILADKGSKVAVFNEIFADIGDEQSIEQSLSTFSSHMTNIVEILAAAD
KDSLVLVDELGAGTDPQEGASLAIAILEHLRLMEIKTMATTHYPELKAYGIETEFVENASMEFDTETLSPTYHFMQGVPG
RSNAFEIARRLGLAEIIVNEAERLTDSDTDVNRIIERLEEQTHESRKRLDHIKEVEQDNLKFNRAVKKLYNEFSHAKDKE
LEKARAKAQEIVDKAMTESEEILKNLHDRASLKPHEVIEAKSQLKKLAPEVDLSKNKVLKKAKKLRAPRVGDDIVVTAYG
QRGTLVNQGKNGKWEVQVGLIKMTLKEDEFTLVKVQEEAQKPKKKQVNVVKKSKKSAGPRARLDLRGKRYEEAMQELDEF
IDQALLNNMAQVDIIHGIGTGVIREGVTKYLRRNKHVKSFGYAPQNAGGSGCTIANLR

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=34128 SGPB_RS09030 WP_013852247.1 1830312..1832648(-) (mutS/mutS2) [Streptococcus pasteurianus ATCC 43144]
ATGAACAACAGAATTTTAGAACAGTTAGAATTTGATAAAGTCAAGCAACTTTTTGCTGGCTATTTACAGACTGAGCAAGG
CCAAGACGAGTTACGTAAACTTGAGCCAATGACTGAGCCTGACCGCATTTCACGTTCCTTTGATGAAATGTCGGACATGG
AACAGATTTTCATTGAACACCATTCTTTTGGAATGGGGAGTTTGCGTGACATTTCTGAAAGTATGCGTCGCTTGGAATTG
GATGCTGACGTTAATATCTCAGAAATTATCGACATCAAGAAAGTCTTGCAAGTCTCAGCTGAAATCAAACATTTTTATAA
TGATTTGGAAAATGTAGAGTTGTCTGCATTAAATACTCTTTTTGAGAAGATTGAATTGTTGCCAAGTCTGCAAGGTAGCT
TACAAGCGATTAATGACGGTGGCTTCATTGAAAATTTTGCAAGTTCAGAATTAGACCGTATTCGTCGCCAAATCAATCAT
GACGAAGGTAGAGTTCGTCAAATTTTGCAGGATATTTTGAAAAAACAAGCTGATCATTTGACAGAGACTTTGATTGCTAG
TCGTAATGGTCGTGCGGTTTTGCCTGTGAAAAATAGCTACCGCAACCGTATTTCAGGGGTTGTGCATGATATTTCGGCAT
CAGGAAGTACGGTTTATATTGAACCGCGCGCAGTAGTGCAACTTAATGAAGAAATCACGCAATTGCGAGCAGATGAACGT
CACGAAATGGCACGTATTTTACGTGAATTGTCAAATATGCTTCGCCCACATACTAATATTATTCGTAACAATGCGTGGGT
TTTAGGGCATTTGGATTTTGTTCGTGCTAAGTTCCTCTTCATGCAGGAAAACAACGCAATCGTGCCACAATTATCAGCAG
ATAAAACCGTGCAACTATTACAAGCTCGCCACCCGCTTTTGACCGATCCAGTCGCCAATGACCTTCATTTTCTTAACGAA
TTGACCGTTATTGTCATTACAGGTCCAAATACTGGTGGTAAGACAGTCATGTTGAAAACATTGGGTTTAGCGCAGCTTAT
GGCACAATCAGGTTTGCCAATCTTGGCTGACAAAGGTAGTAAAGTCGCCGTATTTAATGAAATATTTGCAGATATTGGTG
ATGAGCAATCTATCGAACAAAGTTTGTCAACATTTTCAAGTCATATGACAAATATTGTTGAGATTTTGGCAGCAGCAGAT
AAAGATAGTCTTGTCTTGGTCGATGAATTGGGAGCAGGAACTGACCCACAAGAAGGTGCCAGTCTTGCGATTGCCATTCT
TGAACACCTTCGCCTCATGGAAATTAAAACCATGGCAACGACACATTATCCAGAATTGAAAGCTTACGGTATTGAGACAG
AATTTGTGGAAAATGCCAGTATGGAATTTGATACAGAGACATTAAGTCCAACTTATCATTTTATGCAAGGTGTACCAGGG
CGCTCAAATGCCTTTGAAATTGCTCGTCGTCTTGGTTTAGCAGAGATTATTGTCAATGAAGCAGAGCGTTTGACAGACTC
TGATACGGATGTTAACCGTATCATCGAGCGTTTGGAAGAACAAACCCATGAAAGTCGTAAACGACTTGACCATATCAAAG
AAGTGGAACAAGATAACCTCAAATTCAATCGTGCGGTCAAGAAACTTTATAACGAATTTTCACATGCCAAGGACAAAGAA
CTTGAAAAAGCTCGCGCCAAAGCGCAAGAAATTGTGGATAAAGCCATGACAGAGAGTGAAGAAATTCTCAAAAATCTTCA
TGATAGAGCAAGCCTTAAACCGCATGAAGTTATTGAAGCCAAAAGTCAGCTGAAAAAATTGGCGCCTGAAGTTGATTTGT
CGAAAAATAAAGTCCTCAAGAAAGCTAAAAAATTGCGCGCACCGCGCGTGGGTGATGACATTGTCGTCACAGCTTACGGA
CAACGCGGAACATTGGTTAACCAAGGGAAAAACGGGAAATGGGAAGTGCAAGTTGGTCTTATTAAAATGACACTTAAAGA
GGACGAATTTACCCTTGTTAAAGTTCAAGAGGAAGCCCAAAAGCCGAAGAAAAAACAAGTCAATGTGGTCAAGAAAAGCA
AAAAATCAGCTGGTCCACGTGCCCGCCTTGATCTACGTGGTAAACGTTATGAAGAAGCCATGCAAGAATTGGATGAATTT
ATCGACCAAGCCTTGCTAAATAACATGGCACAAGTCGATATTATTCACGGTATCGGAACAGGTGTTATCCGTGAAGGTGT
CACAAAATACCTTCGCCGCAACAAACACGTCAAATCATTTGGTTATGCCCCACAAAACGCAGGTGGCAGCGGCTGCACCA
TTGCAAATCTAAGGTGA

Domains

Predicted by InterProScan.

Smr domain (Smr)

(703-778)

MutS domain V (MutS_V)

(324-505)

MutS2 and Smr-associated SH3 domain (MSSS)

(630-669)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F5X3C4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

41.087

100

0.418

Multiple sequence alignment