Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   SGPB_RS08715 Genome accession   NC_015600
Coordinates   1764654..1765439 (-) Length   261 a.a.
NCBI ID   WP_003066268.1    Uniprot ID   A0A4R5G5Z8
Organism   Streptococcus pasteurianus ATCC 43144     
Function   repress the expression of comX (predicted from homology)   
Competence regulation

Genomic Context

Location: 1759654..1770439
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGPB_RS08690 (SGPB_1700) - 1759704..1760612 (-) 909 WP_013852206.1 DMT family transporter -
  SGPB_RS08695 (SGPB_1701) gatB 1760772..1762215 (-) 1444 Protein_1713 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB -
  SGPB_RS08700 (SGPB_1703) gatA 1762215..1763681 (-) 1467 WP_003066261.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA -
  SGPB_RS08705 (SGPB_1704) gatC 1763681..1763983 (-) 303 WP_003066263.1 Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC -
  SGPB_RS08710 (SGPB_1705) - 1764106..1764654 (-) 549 WP_013852207.1 cysteine hydrolase family protein -
  SGPB_RS08715 (SGPB_1706) codY 1764654..1765439 (-) 786 WP_003066268.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  SGPB_RS08720 (SGPB_1707) - 1765653..1766867 (-) 1215 WP_003066271.1 pyridoxal phosphate-dependent aminotransferase -
  SGPB_RS08725 (SGPB_1708) - 1766904..1768670 (-) 1767 WP_013852208.1 glycerophosphoryl diester phosphodiesterase membrane domain-containing protein -
  SGPB_RS08730 (SGPB_1709) - 1768994..1769446 (+) 453 WP_013852209.1 universal stress protein -

Sequence

Protein


Download         Length: 261 a.a.        Molecular weight: 28860.04 Da        Isoelectric Point: 4.4574

>NTDB_id=34123 SGPB_RS08715 WP_003066268.1 1764654..1765439(-) (codY) [Streptococcus pasteurianus ATCC 43144]
MPNLLEKTRKITSILQRSVDSLDTELPYNTMAAQLADIIDCNACIINGGGNLLGYAMKYKTNTDRVEEFFDAKQFPESYV
KAASRVYDTEANLSVDNELTIFPVESKDIYPDGLTTIAPIYGGGMRLGSLIIWRNDKEFLEDDLILVEIASTVVGIQLLN
LQTENLEETIRKQTAVNMAINTLSYSEMKAVSAILGELDGTEGRLTASVIADRIGITRSVIVNALRKLESAGIIESRSLG
MKGTYLKVINEGIFDKLKEYN

Nucleotide


Download         Length: 786 bp        

>NTDB_id=34123 SGPB_RS08715 WP_003066268.1 1764654..1765439(-) (codY) [Streptococcus pasteurianus ATCC 43144]
ATGCCGAATTTATTAGAAAAAACACGAAAGATTACATCAATTTTGCAACGCTCCGTTGACAGCTTAGACACTGAATTGCC
ATATAATACAATGGCTGCTCAATTAGCTGATATCATTGATTGTAATGCTTGCATCATTAATGGAGGGGGTAACCTTCTTG
GTTATGCAATGAAGTATAAAACAAATACTGACCGCGTAGAGGAATTCTTTGATGCCAAACAATTCCCAGAAAGCTATGTT
AAAGCGGCTAGTCGTGTTTACGACACAGAGGCAAATTTGTCTGTGGATAATGAATTGACTATTTTCCCAGTAGAATCAAA
AGACATCTATCCTGATGGCTTGACAACTATTGCACCAATCTATGGTGGCGGTATGCGTCTAGGTTCTCTTATCATTTGGC
GTAATGATAAAGAATTTTTAGAAGATGATTTGATTCTTGTTGAAATTGCCTCAACAGTAGTTGGTATCCAATTACTTAAT
CTTCAAACTGAAAATCTTGAAGAAACCATTCGTAAACAAACAGCTGTTAATATGGCTATTAACACGCTATCTTACTCAGA
AATGAAAGCTGTATCAGCTATTTTGGGTGAATTAGACGGTACAGAAGGTCGCTTAACTGCATCAGTTATTGCTGACCGCA
TTGGTATTACACGTTCAGTTATTGTCAATGCCCTACGTAAATTGGAATCTGCAGGGATTATCGAAAGCCGTTCATTGGGG
ATGAAAGGAACTTACCTTAAAGTCATCAATGAAGGTATCTTCGATAAATTAAAGGAATATAATTAA

Domains

Predicted by InterProScan.

CodY helix-turn-helix domain (HTH_CodY)

(202-261)

CodY GAF-like domain (CodY)

(3-182)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4R5G5Z8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Lactococcus lactis subsp. lactis strain DGCC12653

65.9

100

0.659
  codY Bacillus subtilis subsp. subtilis str. 168

52.227

94.636

0.494

Multiple sequence alignment