Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   F5K02_RS04575 Genome accession   NZ_CP044132
Coordinates   914007..915824 (+) Length   605 a.a.
NCBI ID   WP_094032640.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain ZKY01     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 909007..920824
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F5K02_RS04565 (F5K02_04585) - 909673..911997 (+) 2325 WP_094032639.1 peptidase G2 autoproteolytic cleavage domain-containing protein -
  F5K02_RS04570 (F5K02_04590) - 912293..914026 (+) 1734 WP_007408532.1 ABC transporter ATP-binding protein -
  F5K02_RS04575 (F5K02_04595) rcrQ 914007..915824 (+) 1818 WP_094032640.1 ABC transporter ATP-binding protein Regulator
  F5K02_RS04580 (F5K02_04600) - 915992..916396 (+) 405 WP_007408534.1 DoxX family protein -
  F5K02_RS04585 (F5K02_04605) - 916413..917270 (+) 858 WP_094032641.1 VOC family protein -
  F5K02_RS04590 (F5K02_04610) - 917388..918335 (+) 948 WP_094032642.1 AraC family transcriptional regulator -
  F5K02_RS04595 (F5K02_04615) - 918406..919872 (+) 1467 WP_094032643.1 sugar porter family MFS transporter -

Sequence

Protein


Download         Length: 605 a.a.        Molecular weight: 67418.06 Da        Isoelectric Point: 9.5604

>NTDB_id=340753 F5K02_RS04575 WP_094032640.1 914007..915824(+) (rcrQ) [Bacillus amyloliquefaciens strain ZKY01]
MQKDIRKPFRYPKIPLKSNEGGRKRAKAKDTKGTLRRIWSYVAEKKGLLTLVIIMVVISAIFGLLGPFVIGKAIDHFIVG
QTTDGLAGVLFILFGIYLVQSLSLWFQNYWMINISQSTVFKMRSELFTHLHELPIPFFDKQRLGDLMSRVTNDIENVSST
LNTSVIQVLSSVITFVGTISVMLYMSPLLTLITLLIIPIMLLSIKWITNRTGLLFKQQQKNLGELNGFIEESISGAKVIK
AYSREDRVMEQFLEKNAALQSSGFWAQTISGFIPKVMNSLNNLSFTIIAAVGGLFALKGWISIGSIVVFAEYSRQFTRPL
NDLANQFNTMLSAIAGAERVFDVLDEKEEREDEEHAAHQPIKTGDIEFRDVSFGYQEDSPILKHLSFSVPKGQSIAFVGP
TGAGKTTVTSLIARFYEPNEGKILIDGTDIKKLTRSSLRKNMGFVLQDSFLFQGTIRENIRYGRLDASDKEVEAAAKAAN
AHGFIERLPKGYDTVLTQNGAGISQGQKQLISIARAVLADPVLLILDEATSNIDTVTEVKIQEALGRLMAGRTSVIIAHR
LNTIQKADQILVLKDGEMAEKGTHAELLSQNGFYRELYESQFRES

Nucleotide


Download         Length: 1818 bp        

>NTDB_id=340753 F5K02_RS04575 WP_094032640.1 914007..915824(+) (rcrQ) [Bacillus amyloliquefaciens strain ZKY01]
ATGCAAAAAGACATTCGTAAACCTTTCCGATATCCGAAAATACCGCTTAAATCAAATGAAGGCGGCAGAAAACGCGCGAA
AGCAAAAGATACAAAAGGCACGCTGCGCAGAATCTGGTCTTATGTAGCCGAGAAAAAAGGGCTTTTAACCCTTGTGATCA
TCATGGTAGTCATAAGCGCCATATTCGGCCTGCTCGGACCGTTCGTCATCGGGAAAGCGATTGATCATTTTATCGTCGGA
CAGACGACAGACGGATTGGCGGGGGTGCTGTTCATCCTGTTTGGGATTTACCTCGTGCAATCATTGTCCTTATGGTTTCA
AAACTATTGGATGATCAATATCTCGCAAAGCACCGTGTTTAAAATGCGGAGCGAGCTGTTTACCCATCTCCATGAGCTGC
CGATTCCGTTTTTTGATAAACAGCGGCTCGGGGACTTAATGAGCCGGGTCACCAATGATATCGAAAATGTCAGCTCCACT
TTAAATACATCCGTCATTCAAGTGCTGTCGAGCGTCATTACATTCGTCGGCACAATCTCCGTCATGCTGTACATGAGTCC
GCTTTTAACATTGATCACGCTTTTGATTATTCCGATCATGCTTTTGAGCATTAAATGGATCACCAACCGGACGGGACTGC
TGTTTAAACAGCAGCAGAAAAACCTCGGCGAGCTGAACGGTTTTATTGAAGAGTCGATATCAGGGGCGAAGGTCATTAAA
GCCTATTCGAGGGAAGACCGCGTCATGGAACAATTTTTAGAAAAAAACGCGGCGTTACAATCATCGGGGTTTTGGGCGCA
GACAATTTCGGGATTCATTCCGAAAGTCATGAACTCTTTAAACAATTTAAGCTTTACGATTATAGCGGCGGTCGGCGGGC
TGTTTGCGCTGAAGGGATGGATTTCGATCGGTTCCATCGTCGTATTCGCCGAATATTCGCGGCAGTTCACGCGCCCTTTA
AATGATTTAGCCAATCAGTTCAATACGATGTTATCGGCCATCGCCGGGGCTGAACGGGTGTTTGACGTGCTGGATGAAAA
AGAGGAGCGGGAAGATGAGGAGCATGCGGCGCACCAGCCGATCAAAACGGGTGACATTGAATTCCGAGATGTCTCCTTCG
GCTATCAGGAAGACAGCCCGATCTTAAAACACCTGTCCTTCAGCGTTCCGAAAGGACAGTCAATCGCCTTCGTCGGACCG
ACCGGAGCGGGTAAAACAACCGTTACGAGCCTGATCGCCCGTTTTTACGAGCCGAATGAAGGAAAAATCCTCATCGACGG
AACGGACATCAAAAAACTGACGAGATCCAGTCTGAGAAAAAACATGGGGTTTGTCCTGCAGGATTCATTTCTCTTCCAGG
GCACCATCAGGGAGAATATCCGCTACGGCCGGCTGGATGCTTCTGACAAAGAGGTGGAGGCAGCCGCAAAAGCCGCCAAT
GCCCACGGATTCATCGAACGGCTCCCGAAAGGCTACGATACCGTTCTTACCCAAAACGGCGCGGGCATCAGCCAAGGACA
GAAGCAGCTCATTTCCATCGCGAGAGCTGTGCTGGCGGACCCGGTTCTGCTCATTTTGGACGAAGCGACGAGCAACATTG
ACACAGTGACCGAAGTGAAAATACAAGAAGCGCTCGGCCGTTTAATGGCGGGCAGAACAAGCGTCATCATCGCTCACAGG
CTGAACACAATTCAAAAAGCCGATCAGATTCTTGTGCTGAAAGACGGCGAAATGGCTGAAAAAGGAACCCATGCCGAACT
TCTCAGCCAGAACGGGTTTTACCGGGAATTATATGAAAGCCAGTTCCGGGAATCATAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(49-320)

ABC transporter (ABC_tran)

(382-531)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

38.593

96.364

0.372