Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   FOB68_RS05395 Genome accession   NZ_CP044106
Coordinates   1016466..1017239 (-) Length   257 a.a.
NCBI ID   WP_000055337.1    Uniprot ID   P63843
Organism   Staphylococcus aureus strain FDAARGOS_660     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1011466..1022239
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB68_RS05360 (FOB68_05365) - 1011719..1012489 (-) 771 WP_150344378.1 isoprenyl transferase -
  FOB68_RS05365 (FOB68_05370) frr 1012862..1013416 (-) 555 WP_001280006.1 ribosome recycling factor -
  FOB68_RS05370 (FOB68_05375) pyrH 1013435..1014157 (-) 723 WP_000057330.1 UMP kinase -
  FOB68_RS05375 (FOB68_05380) tsf 1014294..1015175 (-) 882 WP_000201386.1 translation elongation factor Ts -
  FOB68_RS05380 (FOB68_05385) - 1015210..1015323 (-) 114 WP_031845108.1 hypothetical protein -
  FOB68_RS05385 (FOB68_05390) rpsB 1015357..1016124 (-) 768 WP_000268484.1 30S ribosomal protein S2 -
  FOB68_RS05390 (FOB68_05395) - 1016323..1016415 (-) 93 WP_031788481.1 hypothetical protein -
  FOB68_RS05395 (FOB68_05400) codY 1016466..1017239 (-) 774 WP_000055337.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  FOB68_RS05400 (FOB68_05405) hslU 1017264..1018667 (-) 1404 WP_000379054.1 ATP-dependent protease ATPase subunit HslU -
  FOB68_RS05405 (FOB68_05410) hslV 1018733..1019278 (-) 546 WP_000072681.1 ATP-dependent protease subunit HslV -
  FOB68_RS05410 (FOB68_05415) xerC 1019275..1020171 (-) 897 WP_001015609.1 tyrosine recombinase XerC -
  FOB68_RS05415 (FOB68_05420) trmFO 1020589..1021896 (-) 1308 WP_000195254.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28755.13 Da        Isoelectric Point: 6.0680

>NTDB_id=340681 FOB68_RS05395 WP_000055337.1 1016466..1017239(-) (codY) [Staphylococcus aureus strain FDAARGOS_660]
MSLLSKTRELNTLLQKHKGIAVDFKDVAQTISSVTVTNVFIVSRRGKILGSSLNELLKSQRIIQMLEERHIPSEYTERLM
EVKQTESNIDIDNVLTVFPPENRELFIDSRTTIFPILGGGERLGTLVLGRVHDDFNENDLVLGEYAATVIGMEILREKHS
EVEKEARDKAAITMAINSLSYSEKEAIEHIFEELGGTEGLLIASKVADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
FIKVKKEKFLDELEKSK

Nucleotide


Download         Length: 774 bp        

>NTDB_id=340681 FOB68_RS05395 WP_000055337.1 1016466..1017239(-) (codY) [Staphylococcus aureus strain FDAARGOS_660]
ATGAGCTTATTATCTAAAACGAGAGAGTTAAACACGTTACTTCAAAAACACAAAGGTATTGCGGTTGATTTTAAAGATGT
AGCACAAACGATTAGTAGCGTAACTGTAACAAATGTATTTATTGTATCGCGTCGAGGTAAAATTTTAGGGTCGAGTCTAA
ATGAATTATTAAAAAGTCAAAGAATTATTCAAATGTTGGAAGAAAGACATATTCCAAGTGAATATACAGAACGATTAATG
GAAGTTAAACAAACAGAATCAAATATTGATATCGACAATGTATTAACAGTTTTCCCACCTGAAAACAGAGAATTATTCAT
AGATAGTCGTACAACTATCTTCCCAATTTTAGGTGGAGGAGAAAGATTAGGTACATTAGTACTTGGTCGAGTACATGATG
ATTTTAATGAAAATGATTTGGTACTAGGTGAATATGCTGCTACAGTTATTGGTATGGAAATCTTACGTGAGAAGCATAGT
GAAGTAGAAAAAGAAGCGCGCGATAAAGCTGCTATTACAATGGCAATTAATTCATTATCTTATTCTGAAAAAGAAGCAAT
TGAACATATCTTTGAAGAACTTGGCGGTACAGAAGGCCTATTAATCGCATCAAAAGTTGCAGATAGAGTTGGTATTACTA
GATCTGTAATTGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTAATTGAATCACGTTCTTTAGGAATGAAAGGTACT
TTCATTAAAGTTAAAAAAGAAAAATTCTTAGATGAATTAGAAAAAAGTAAGTAA

Domains

Predicted by InterProScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P63843

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

64.202

100

0.642
  codY Lactococcus lactis subsp. lactis strain DGCC12653

42.802

100

0.428

Multiple sequence alignment