Detailed information NTG0340632

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ETK69_RS09380
• Genome accession: NZ_CP035410
• Coordinates: 1814329..1815108 (+)
• Length: 259 a.a.
• NCBI ID: WP_017417775.1
• Uniprot ID: A0A411A618
• Organism: Bacillus velezensis strain SRCM103616
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1809329..1820108

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ETK69_RS09360 (ETK69_09360)	trmFO	1810016..1811323 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ETK69_RS09365 (ETK69_09365)	xerC	1811393..1812310 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ETK69_RS09370 (ETK69_09370)	hslV	1812326..1812871 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ETK69_RS09375 (ETK69_09375)	hslU	1812879..1814291 (+)	1413	WP_257986734.1	HslU--HslV peptidase ATPase subunit	-
ETK69_RS09380 (ETK69_09380)	codY	1814329..1815108 (+)	780	WP_017417775.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ETK69_RS09385 (ETK69_09385)	flgB	1815462..1815851 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ETK69_RS09390 (ETK69_09390)	flgC	1815851..1816303 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ETK69_RS09395 (ETK69_09395)	fliE	1816314..1816634 (+)	321	WP_110085558.1	flagellar hook-basal body complex protein FliE	-
ETK69_RS09400 (ETK69_09400)	fliF	1816677..1818287 (+)	1611	WP_022553346.1	flagellar basal-body MS-ring/collar protein FliF	-
ETK69_RS09405 (ETK69_09405)	fliG	1818300..1819316 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ETK69_RS09410 (ETK69_09410)	fliH	1819309..1820064 (+)	756	WP_129093712.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29055.26 Da
• Isoelectric Point: 4.6560

>NTDB_id=340632 ETK69_RS09380 WP_017417775.1 1814329..1815108(+) (codY) [Bacillus velezensis strain SRCM103616]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQNQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=340632 ETK69_RS09380 WP_017417775.1 1814329..1815108(+) (codY) [Bacillus velezensis strain SRCM103616]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGAATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: A0A411A618

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	98.842	100	0.988
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471