Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ETK61_RS09110 Genome accession   NZ_CP035406
Coordinates   1718183..1718962 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM103612     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1713183..1723962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETK61_RS09090 (ETK61_09090) trmFO 1713876..1715183 (+) 1308 WP_129137642.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ETK61_RS09095 (ETK61_09095) xerC 1715251..1716165 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  ETK61_RS09100 (ETK61_09100) clpQ 1716178..1716723 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ETK61_RS09105 (ETK61_09105) hslU 1716731..1718143 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  ETK61_RS09110 (ETK61_09110) codY 1718183..1718962 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ETK61_RS09115 (ETK61_09115) flgB 1719342..1719731 (+) 390 WP_041335963.1 flagellar basal body rod protein FlgB -
  ETK61_RS09120 (ETK61_09120) flgC 1719731..1720183 (+) 453 WP_041335966.1 flagellar basal body rod protein FlgC -
  ETK61_RS09125 (ETK61_09125) fliE 1720194..1720514 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ETK61_RS09130 (ETK61_09130) fliF 1720560..1722170 (+) 1611 WP_072557157.1 flagellar basal-body MS-ring/collar protein FliF -
  ETK61_RS09135 (ETK61_09135) fliG 1722183..1723199 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ETK61_RS09140 (ETK61_09140) fliH 1723192..1723944 (+) 753 WP_172843761.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=340554 ETK61_RS09110 WP_003220850.1 1718183..1718962(+) (codY) [Bacillus subtilis strain SRCM103612]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=340554 ETK61_RS09110 WP_003220850.1 1718183..1718962(+) (codY) [Bacillus subtilis strain SRCM103612]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGTTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTTCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment