Detailed information NTG0340478

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ETK49_RS09420
• Genome accession: NZ_CP035405
• Coordinates: 1815669..1816448 (+)
• Length: 259 a.a.
• NCBI ID: WP_003181756.1
• Uniprot ID: A0A1Y0YKK2
• Organism: Bacillus licheniformis strain SRCM103608
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1810669..1821448

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ETK49_RS09400 (ETK49_09400)	trmFO	1811366..1812670 (+)	1305	WP_003181748.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ETK49_RS09405 (ETK49_09405)	xerC	1812737..1813651 (+)	915	WP_011197974.1	tyrosine recombinase XerC	-
ETK49_RS09410 (ETK49_09410)	hslV	1813665..1814210 (+)	546	WP_003181752.1	ATP-dependent protease subunit HslV	-
ETK49_RS09415 (ETK49_09415)	hslU	1814218..1815630 (+)	1413	WP_254926368.1	HslU--HslV peptidase ATPase subunit	-
ETK49_RS09420 (ETK49_09420)	codY	1815669..1816448 (+)	780	WP_003181756.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ETK49_RS09425 (ETK49_09425)	flgB	1816801..1817190 (+)	390	WP_003181758.1	flagellar basal body rod protein FlgB	-
ETK49_RS09430 (ETK49_09430)	flgC	1817190..1817642 (+)	453	WP_009328519.1	flagellar basal body rod protein FlgC	-
ETK49_RS09435 (ETK49_09435)	fliE	1817656..1817973 (+)	318	WP_003181764.1	flagellar hook-basal body complex protein FliE	-
ETK49_RS09440 (ETK49_09440)	fliF	1818024..1819625 (+)	1602	WP_003181766.1	flagellar basal-body MS-ring/collar protein FliF	-
ETK49_RS09445 (ETK49_09445)	fliG	1819639..1820655 (+)	1017	WP_003181768.1	flagellar motor switch protein FliG	-
ETK49_RS09450 (ETK49_09450)	fliH	1820639..1821406 (+)	768	WP_009328518.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29073.42 Da
• Isoelectric Point: 4.8196

>NTDB_id=340478 ETK49_RS09420 WP_003181756.1 1815669..1816448(+) (codY) [Bacillus licheniformis strain SRCM103608]
MALLQKTRKINAMLQNAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGFSINQQIENDRMKKMLEERQFPEDYTKSLF
NIPETSSNLDINSEYTAFPVENRDLFQAGLTTVVPIIGGGERLGTLILSRLQEKFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLMELEKLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=340478 ETK49_RS09420 WP_003181756.1 1815669..1816448(+) (codY) [Bacillus licheniformis strain SRCM103608]
ATGGCTTTATTACAAAAAACAAGAAAGATTAATGCAATGCTGCAAAATGCGGCAGGGAAGCCGGTTAATTTTAAAGAAAT
GGCCGAAACGCTTCGCGATGTGATTGATTCGAACATTTTCGTCGTCAGCCGCAGAGGAAAGCTTCTCGGTTTCTCGATCA
ACCAGCAGATCGAAAATGACCGGATGAAAAAAATGCTTGAAGAGCGCCAGTTTCCTGAAGATTATACAAAAAGCCTGTTC
AACATTCCGGAAACGTCATCTAACCTTGACATCAACAGCGAATACACAGCTTTCCCTGTGGAAAACCGCGATTTGTTCCA
AGCGGGTCTGACCACGGTCGTTCCGATCATCGGAGGAGGCGAAAGACTGGGCACCTTGATTCTGTCCCGCCTTCAGGAGA
AATTCGAGGATGACGATCTGATCCTTGCCGAATATGGCGCCACTGTCGTAGGAATGGAAATTCTCAGAGAGAAAGCGGAA
GAGATCGAAGAGGAAGCGCGCAGCAAAGCGGTCGTTCAAATGGCGATCAGTTCACTATCTTACAGCGAGCTTGAAGCAAT
TGAACATATTTTTGAGGAGCTTGACGGAAATGAAGGCCTGCTTGTCGCTAGTAAAATTGCAGACCGCGTCGGCATCACCC
GCTCGGTCATTGTCAACGCGCTCCGTAAACTTGAAAGCGCCGGTGTCATTGAATCAAGGTCACTAGGGATGAAAGGCACA
TACATCAAAGTGCTGAACAACAAATTTTTGATGGAGTTAGAAAAACTAAAGTCTCATTAA

Domains

Predicted by InterproScan.

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

• CodY GAF-like domain (CodY) (3-178)

3D structure

• AlphaFold DB: A0A1Y0YKK2

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	94.595	100	0.946
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.451	98.456	0.467