Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ETA15_RS09430 Genome accession   NZ_CP035403
Coordinates   1779644..1780423 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM103581     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1774644..1785423
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ETA15_RS09410 (ETA15_09410) trmFO 1775337..1776644 (+) 1308 WP_017694866.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ETA15_RS09415 (ETA15_09415) xerC 1776712..1777626 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  ETA15_RS09420 (ETA15_09420) clpQ 1777639..1778184 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ETA15_RS09425 (ETA15_09425) hslU 1778192..1779604 (+) 1413 WP_257986695.1 HslU--HslV peptidase ATPase subunit -
  ETA15_RS09430 (ETA15_09430) codY 1779644..1780423 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ETA15_RS09435 (ETA15_09435) flgB 1780803..1781192 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  ETA15_RS09440 (ETA15_09440) flgC 1781192..1781644 (+) 453 WP_017694868.1 flagellar basal body rod protein FlgC -
  ETA15_RS09445 (ETA15_09445) fliE 1781655..1781975 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ETA15_RS09450 (ETA15_09450) fliF 1782021..1783631 (+) 1611 WP_080317085.1 flagellar basal-body MS-ring/collar protein FliF -
  ETA15_RS09455 (ETA15_09455) fliG 1783644..1784660 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ETA15_RS09460 (ETA15_09460) fliH 1784653..1785405 (+) 753 WP_026113606.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=340330 ETA15_RS09430 WP_003220850.1 1779644..1780423(+) (codY) [Bacillus subtilis strain SRCM103581]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=340330 ETA15_RS09430 WP_003220850.1 1779644..1780423(+) (codY) [Bacillus subtilis strain SRCM103581]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAGAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment