Detailed information NTG0034026

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: PGTDC60_RS04845
• Genome accession: NC_015571
• Coordinates: 1145036..1146340 (-)
• Length: 434 a.a.
• NCBI ID: WP_043890175.1
• Uniprot ID: -
• Organism: Porphyromonas gingivalis TDC60
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1140036..1151340

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGTDC60_RS04825 (PGTDC60_1101)	panD	1140958..1141314 (-)	357	WP_010956218.1	aspartate 1-decarboxylase	-
PGTDC60_RS04830 (PGTDC60_1102)	murF	1141524..1142828 (+)	1305	WP_013815894.1	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	-
PGTDC60_RS04835 (PGTDC60_1103)	rpoN	1142822..1144279 (+)	1458	WP_013815895.1	RNA polymerase factor sigma-54	-
PGTDC60_RS04840 (PGTDC60_1104)	-	1144243..1145010 (-)	768	WP_013815896.1	tRNA1(Val) (adenine(37)-N6)-methyltransferase	-
PGTDC60_RS04845 (PGTDC60_1105)	rarA	1145036..1146340 (-)	1305	WP_043890175.1	replication-associated recombination protein A	Machinery gene
PGTDC60_RS04850 (PGTDC60_1106)	-	1146424..1146882 (-)	459	WP_004584424.1	hypothetical protein	-
PGTDC60_RS04855 (PGTDC60_1107)	-	1147231..1148691 (+)	1461	WP_013815898.1	sodium:solute symporter	-
PGTDC60_RS04860 (PGTDC60_1108)	-	1148688..1149539 (+)	852	WP_013815899.1	BadF/BadG/BcrA/BcrD ATPase family protein	-
PGTDC60_RS04865 (PGTDC60_1109)	murQ	1149532..1150356 (+)	825	WP_013815900.1	N-acetylmuramic acid 6-phosphate etherase	-

Sequence

Protein

• Length: 434 a.a.
• Molecular weight: 48313.21 Da
• Isoelectric Point: 5.6527

>NTDB_id=34026 PGTDC60_RS04845 WP_043890175.1 1145036..1146340(-) (rarA) [Porphyromonas gingivalis TDC60]
MKQIPLAERMRPKTLADYVGQQHLIGSGAVLRQMIEQGQTPSMILWGPPGVGKTTLAEIIAHEVDAPFYTLSAVSSGVKE
VREVIADIESNRGNLFDKGGRAILFIDEIHRFSKSQQDSLLAAVERGIVTLIGATTENPSFEVIRPLLSRCQVYVLKPQS
DEDLLLLAHRAIDRDELLAAKHPVLEETEALLLYAGGDARKLLNILDLLATSEVEDRLVITNEKIRQRLQENPAAFDKGG
ELHYDIASAFIKSIRGSDPDAAIYWLARLIDGGEEPSFIARRLIISASEDIGLANPNAMLIAMACAEALDRIGWPEGRIP
LAEATIYLATSEKSNSAYLAIDSALEYVRQSGNLPVPLHLRNAPTRLMADLDYGKGYKYSHDFPEHFVSQQYLPDKAANT
SFWTPQMHTVHEAKLGERMKRWWKREKPQKDTAE

Nucleotide

• Length: 1305 bp

>NTDB_id=34026 PGTDC60_RS04845 WP_043890175.1 1145036..1146340(-) (rarA) [Porphyromonas gingivalis TDC60]
ATGAAACAAATACCCTTGGCCGAGAGAATGCGTCCAAAAACGCTGGCCGACTATGTGGGGCAGCAGCATCTGATCGGATC
GGGGGCTGTGCTCCGGCAGATGATCGAGCAGGGACAGACGCCATCCATGATTCTGTGGGGGCCTCCCGGAGTAGGCAAGA
CTACGCTGGCCGAAATCATCGCTCATGAAGTGGATGCACCTTTCTATACATTGAGTGCGGTCAGCTCCGGTGTGAAGGAA
GTGCGGGAAGTAATAGCCGACATCGAATCCAATCGTGGCAATCTGTTCGACAAAGGAGGACGCGCCATCCTCTTCATCGA
CGAGATACACCGTTTCAGCAAGAGTCAGCAGGATTCTCTTCTGGCAGCCGTAGAGCGGGGAATAGTGACGCTGATCGGTG
CCACGACCGAAAATCCGAGTTTCGAAGTAATACGTCCGCTCCTATCGCGCTGTCAGGTCTATGTGCTCAAACCCCAAAGT
GATGAGGATCTGCTGCTACTGGCACACAGGGCTATCGATCGGGACGAACTGCTGGCTGCCAAGCATCCTGTACTGGAGGA
GACGGAAGCTCTGCTTCTCTATGCCGGAGGCGATGCACGAAAGCTGCTGAACATCCTTGACCTTCTGGCCACAAGCGAAG
TGGAAGACCGGCTCGTCATTACCAACGAAAAGATACGTCAGCGCTTGCAAGAAAACCCCGCAGCTTTCGACAAGGGAGGC
GAGCTCCACTATGATATAGCATCCGCCTTTATCAAAAGTATTCGGGGCAGTGATCCCGACGCGGCTATTTACTGGCTGGC
GCGCCTTATAGATGGTGGGGAGGAACCCTCATTCATCGCTCGCAGGCTGATCATATCGGCTTCGGAAGACATCGGCCTGG
CTAATCCGAATGCCATGCTTATCGCCATGGCCTGTGCCGAGGCTTTAGACCGAATCGGCTGGCCTGAAGGCCGTATTCCA
TTGGCCGAGGCTACCATTTATTTGGCTACTTCGGAGAAGAGCAATTCAGCTTATTTGGCCATCGACTCCGCTCTCGAATA
TGTCCGTCAATCAGGTAATCTTCCCGTGCCCCTACACTTGCGTAATGCCCCTACCCGTCTGATGGCCGACCTTGACTATG
GCAAGGGTTACAAATACTCGCATGATTTTCCGGAGCACTTCGTCTCACAGCAATATCTGCCCGACAAAGCTGCTAACACC
TCTTTCTGGACACCTCAAATGCACACAGTGCATGAAGCCAAGCTGGGAGAACGGATGAAGCGATGGTGGAAGAGGGAAAA
ACCCCAAAAGGATACAGCAGAATAA

Domains

Predicted by InterProScan.

• AAA C-terminal domain (AAA_assoc_2) (188-255)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (10-131)

• MgsA AAA+ ATPase C terminal (MgsA_C) (256-423)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	40.187	98.618	0.396