Detailed information NTG0340013

Bioinformatically predicted

Overview

• Name: codY
• Type: Regulator
• Locus tag: ETA12_RS09010
• Genome accession: NZ_CP035399
• Coordinates: 1760507..1761286 (+)
• Length: 259 a.a.
• NCBI ID: WP_017417775.1
• Uniprot ID: A0A411A618
• Organism: Bacillus velezensis strain SRCM103788
• Function: repression of comK (predicted from homology) Competence regulation

Genomic Context

Location: 1755507..1766286

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ETA12_RS08990 (ETA12_08990)	trmFO	1756194..1757501 (+)	1308	WP_012117550.1	FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO	-
ETA12_RS08995 (ETA12_08995)	xerC	1757571..1758488 (+)	918	WP_007409774.1	tyrosine recombinase XerC	-
ETA12_RS09000 (ETA12_09000)	hslV	1758504..1759049 (+)	546	WP_003154267.1	ATP-dependent protease subunit HslV	-
ETA12_RS09005 (ETA12_09005)	hslU	1759057..1760469 (+)	1413	WP_257986734.1	HslU--HslV peptidase ATPase subunit	-
ETA12_RS09010 (ETA12_09010)	codY	1760507..1761286 (+)	780	WP_017417775.1	GTP-sensing pleiotropic transcriptional regulator CodY	Regulator
ETA12_RS09015 (ETA12_09015)	flgB	1761640..1762029 (+)	390	WP_003154260.1	flagellar basal body rod protein FlgB	-
ETA12_RS09020 (ETA12_09020)	flgC	1762029..1762481 (+)	453	WP_003154259.1	flagellar basal body rod protein FlgC	-
ETA12_RS09025 (ETA12_09025)	fliE	1762492..1762812 (+)	321	WP_110085558.1	flagellar hook-basal body complex protein FliE	-
ETA12_RS09030 (ETA12_09030)	fliF	1762855..1764465 (+)	1611	WP_022553346.1	flagellar basal-body MS-ring/collar protein FliF	-
ETA12_RS09035 (ETA12_09035)	fliG	1764478..1765494 (+)	1017	WP_003154256.1	flagellar motor switch protein FliG	-
ETA12_RS09040 (ETA12_09040)	fliH	1765487..1766242 (+)	756	WP_129093712.1	flagellar assembly protein FliH	-

Sequence

Protein

• Length: 259 a.a.
• Molecular weight: 29055.26 Da
• Isoelectric Point: 4.6560

>NTDB_id=340013 ETA12_RS09010 WP_017417775.1 1760507..1761286(+) (codY) [Bacillus velezensis strain SRCM103788]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQNQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide

• Length: 780 bp

>NTDB_id=340013 ETA12_RS09010 WP_017417775.1 1760507..1761286(+) (codY) [Bacillus velezensis strain SRCM103788]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGAATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

• CodY GAF-like domain (CodY) (3-178)

• CodY helix-turn-helix domain (HTH_CodY) (198-255)

3D structure

• AlphaFold DB: A0A411A618

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
codY	Bacillus subtilis subsp. subtilis str. 168	98.842	100	0.988
codY	Lactococcus lactis subsp. lactis strain DGCC12653	47.843	98.456	0.471