Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   F3K22_RS13195 Genome accession   NZ_CP043958
Coordinates   3109117..3111051 (+) Length   644 a.a.
NCBI ID   WP_013003829.1    Uniprot ID   C9ZAX0
Organism   Streptomyces sp. LBUM 1475     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3104117..3116051
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F3K22_RS13180 (F3K22_13295) - 3105348..3105653 (+) 306 WP_037726468.1 hypothetical protein -
  F3K22_RS13185 (F3K22_13300) - 3105723..3107177 (+) 1455 WP_013003831.1 FGGY family carbohydrate kinase -
  F3K22_RS13190 (F3K22_13305) rcrP 3107384..3109117 (+) 1734 WP_013003830.1 ABC transporter ATP-binding protein Regulator
  F3K22_RS13195 (F3K22_13310) rcrQ 3109117..3111051 (+) 1935 WP_013003829.1 ABC transporter ATP-binding protein Regulator
  F3K22_RS13200 (F3K22_13315) - 3111151..3112476 (-) 1326 WP_060904682.1 RNA polymerase sigma factor -
  F3K22_RS13205 (F3K22_13320) dnaG 3112690..3114591 (-) 1902 WP_013003827.1 DNA primase -
  F3K22_RS13210 (F3K22_13325) - 3114706..3115971 (-) 1266 WP_060904684.1 FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 644 a.a.        Molecular weight: 69447.82 Da        Isoelectric Point: 5.3123

>NTDB_id=339952 F3K22_RS13195 WP_013003829.1 3109117..3111051(+) (rcrQ) [Streptomyces sp. LBUM 1475]
MAGPLARMAGAGAPDQHSMDFKGSGKRLLAQFRPERFTMYAMIVCAVLSVGLSVLGPYILGRATDLVFAGVVGREMPAGA
TKAEVLASMRERGDGAVADMLSGTDFTPGKGIDFDAVGTVLLVALGIFLVAGLLMAAATRLSNRAINRTVYHMREELQAK
LSRLPLAYFDRRQRGEVLSRATNDLDNIGQTLQQSMGQLVNSLLTIIGVLVMMFWVSPLLALVALVTVPVSFLVATRVGK
RSQPHFVAQWRVTGKLNAHIEEMYTGHTLVKVFGRQEESAKQFAEENERLYEAGFKAQFNSGIMQPLMFFVSNINYVLVA
VVGGLRVATGALSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERIFELLDAGEQEADAVPGVRPEELRGRVALE
NVSFRYEADKPLIEDLSLAVEPGHTVAIVGPTGAGKTTLVNLLMRFYEVTGGRITLDGVDIASMSRDELRDGIGMVLQDT
WLFGGTIAENIAYGASASRKVTRGEIEEAARAAHADRFVRTLPDGYDTVIDDEGSGVSAGEKQLITIARAFLSDPVILVL
DEATSSVDTRTEVLIQKAMAKLAHGRTSFVIAHRLSTIRDADTILVMENGAIVEQGAHEELLAADGAYARLYKAQFAEAV
AEVD

Nucleotide


Download         Length: 1935 bp        

>NTDB_id=339952 F3K22_RS13195 WP_013003829.1 3109117..3111051(+) (rcrQ) [Streptomyces sp. LBUM 1475]
ATGGCCGGGCCGTTGGCACGGATGGCGGGGGCCGGGGCCCCCGATCAGCACTCCATGGACTTCAAGGGGTCCGGGAAACG
GCTGCTGGCGCAGTTCAGGCCCGAGCGCTTCACCATGTACGCGATGATCGTGTGCGCGGTGCTCAGCGTCGGTCTGTCGG
TGCTGGGGCCCTACATTCTGGGCCGGGCGACCGACCTCGTCTTCGCGGGGGTCGTCGGGCGGGAGATGCCGGCGGGCGCG
ACGAAGGCCGAGGTGCTGGCCTCCATGCGCGAGCGCGGGGACGGCGCGGTCGCCGACATGCTGTCGGGCACGGACTTCAC
GCCCGGCAAGGGCATCGATTTCGACGCCGTCGGCACGGTGCTGCTGGTTGCCCTCGGCATCTTCCTGGTCGCGGGGCTGC
TGATGGCGGCGGCGACCCGGCTCTCCAACCGGGCGATCAACCGGACCGTCTACCACATGCGCGAGGAGCTGCAGGCGAAG
CTGTCGCGACTGCCGCTGGCGTACTTCGACCGGCGGCAGCGCGGTGAGGTGCTGAGCCGGGCGACCAACGACCTCGACAA
CATCGGCCAGACGCTCCAGCAGTCGATGGGGCAGCTGGTCAACTCGCTGCTCACGATCATCGGCGTGCTGGTGATGATGT
TCTGGGTGTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACCGTGCCGGTGTCGTTCCTGGTGGCCACGCGGGTCGGCAAG
CGGTCTCAGCCGCACTTCGTGGCGCAGTGGCGGGTGACGGGCAAGCTCAACGCGCACATCGAGGAGATGTACACCGGGCA
CACGCTCGTGAAGGTGTTCGGGCGGCAGGAGGAGTCGGCGAAGCAGTTCGCCGAGGAGAACGAGCGGCTGTACGAGGCCG
GGTTCAAGGCCCAGTTCAACAGCGGGATCATGCAGCCGCTGATGTTCTTCGTGTCGAACATCAACTACGTGCTCGTCGCG
GTGGTGGGCGGACTGCGGGTGGCCACGGGTGCCCTGTCCATCGGTGACGTGCAGGCGTTCATCCAGTACTCGCGGCAGTT
CTCGATGCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGCGTCGCCTCGGCCGAGCGGATCTTCGAAC
TGCTCGACGCGGGGGAGCAGGAGGCCGACGCGGTGCCCGGCGTGCGGCCGGAGGAGCTGCGGGGGCGGGTCGCGCTGGAG
AACGTCTCCTTCCGGTACGAGGCCGACAAGCCGCTGATCGAGGATCTGTCGCTGGCGGTCGAGCCGGGGCACACGGTCGC
GATCGTGGGGCCGACGGGCGCGGGGAAGACCACGCTCGTCAACCTGTTGATGCGGTTCTACGAGGTCACCGGGGGGCGGA
TCACGCTCGACGGCGTCGACATCGCGTCCATGTCGCGGGACGAACTGCGGGACGGGATAGGGATGGTGCTCCAGGACACC
TGGCTGTTCGGCGGGACCATCGCGGAGAACATCGCGTACGGGGCGTCCGCGTCGCGGAAGGTGACGCGGGGGGAGATCGA
GGAGGCGGCCCGGGCCGCGCACGCGGACCGGTTCGTGCGGACGTTGCCGGACGGGTACGACACCGTGATCGACGACGAGG
GGTCCGGGGTGAGCGCGGGTGAGAAGCAGCTCATCACGATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTG
GACGAGGCGACGTCCTCGGTGGACACGCGTACGGAGGTGTTGATCCAGAAGGCGATGGCCAAGTTGGCGCACGGGCGGAC
CTCGTTCGTGATCGCGCACCGGCTGTCGACGATCCGGGACGCGGACACGATCCTGGTGATGGAGAACGGGGCCATCGTGG
AGCAGGGGGCGCACGAGGAGTTGCTGGCGGCGGACGGGGCGTACGCGCGGCTGTACAAGGCGCAGTTCGCGGAGGCGGTG
GCCGAGGTGGACTGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(414-565)

ABC transporter transmembrane region (ABC_membrane)

(41-351)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB C9ZAX0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.484

96.273

0.39