Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   UMN179_RS05095 Genome accession   NC_015460
Coordinates   1087928..1088224 (-) Length   98 a.a.
NCBI ID   WP_013745821.1    Uniprot ID   -
Organism   Gallibacterium anatis UMN179     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1082928..1093224
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  UMN179_RS05075 (UMN179_01003) ppx 1084400..1085884 (+) 1485 WP_013745817.1 exopolyphosphatase -
  UMN179_RS05080 (UMN179_01004) - 1085968..1086873 (-) 906 WP_013745818.1 pirin family protein -
  UMN179_RS05085 (UMN179_01005) - 1086870..1087391 (-) 522 WP_013745819.1 NADPH-dependent FMN reductase -
  UMN179_RS05090 (UMN179_01006) glpE 1087542..1087868 (-) 327 WP_013745820.1 thiosulfate sulfurtransferase GlpE -
  UMN179_RS05095 (UMN179_01007) comQ 1087928..1088224 (-) 297 WP_013745821.1 DUF5374 domain-containing protein Machinery gene
  UMN179_RS05100 (UMN179_01008) - 1088205..1088858 (-) 654 WP_013745822.1 DUF2572 family protein -
  UMN179_RS05105 (UMN179_01009) - 1088842..1089492 (-) 651 WP_237699489.1 Type II secretory pathway, component PulJ -
  UMN179_RS05110 (UMN179_01010) - 1089554..1090087 (-) 534 WP_013745824.1 Tfp pilus assembly protein FimT/FimU -
  UMN179_RS05115 (UMN179_01011) - 1090232..1090693 (-) 462 WP_013745825.1 ClpXP protease specificity-enhancing factor -
  UMN179_RS05120 (UMN179_01012) sspA 1090703..1091341 (-) 639 WP_013745826.1 stringent starvation protein SspA -
  UMN179_RS13300 - 1091482..1092375 (-) 894 WP_413540467.1 sigma 54-interacting transcriptional regulator -
  UMN179_RS13775 - 1092718..1093059 (-) 342 Protein_1000 ACT domain-containing protein -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11145.11 Da        Isoelectric Point: 9.3292

>NTDB_id=33979 UMN179_RS05095 WP_013745821.1 1087928..1088224(-) (comQ) [Gallibacterium anatis UMN179]
MILAQHNLKGSAIINVLVTLMFLSLLLLSTQHWIKRQQQQTVILWQATQALQIAENQWNLRVIGENCEKNVQQNGIVFNI
QCSGNQVVVHYPLGKIVL

Nucleotide


Download         Length: 297 bp        

>NTDB_id=33979 UMN179_RS05095 WP_013745821.1 1087928..1088224(-) (comQ) [Gallibacterium anatis UMN179]
GTGATTTTGGCGCAACATAATCTGAAAGGCAGTGCTATTATCAATGTCTTGGTGACGCTGATGTTTTTGTCACTGTTATT
ACTGTCGACACAGCATTGGATTAAGCGGCAACAGCAGCAAACAGTAATTTTGTGGCAGGCGACACAAGCTTTGCAAATTG
CTGAAAATCAATGGAATTTAAGAGTCATCGGTGAAAATTGTGAAAAAAACGTACAACAAAACGGCATTGTTTTTAATATT
CAATGTAGCGGCAATCAGGTAGTGGTGCATTATCCGCTGGGAAAAATTGTGTTGTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(59-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

38.776

100

0.388

Multiple sequence alignment