Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ES965_RS08700 Genome accession   NZ_CP035391
Coordinates   1659652..1660431 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM103689     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1654652..1665431
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES965_RS08680 (ES965_08680) trmFO 1655345..1656652 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ES965_RS08685 (ES965_08685) xerC 1656720..1657634 (+) 915 WP_086343835.1 tyrosine recombinase XerC -
  ES965_RS08690 (ES965_08690) clpQ 1657647..1658192 (+) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  ES965_RS08695 (ES965_08695) hslU 1658200..1659612 (+) 1413 WP_256683486.1 HslU--HslV peptidase ATPase subunit -
  ES965_RS08700 (ES965_08700) codY 1659652..1660431 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ES965_RS08705 (ES965_08705) flgB 1660811..1661200 (+) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  ES965_RS08710 (ES965_08710) flgC 1661200..1661652 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  ES965_RS08715 (ES965_08715) fliE 1661663..1661983 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ES965_RS08720 (ES965_08720) fliF 1662029..1663639 (+) 1611 WP_052476550.1 flagellar basal-body MS-ring/collar protein FliF -
  ES965_RS08725 (ES965_08725) fliG 1663652..1664668 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ES965_RS08730 (ES965_08730) fliH 1664661..1665413 (+) 753 WP_024572494.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=339615 ES965_RS08700 WP_003220850.1 1659652..1660431(+) (codY) [Bacillus subtilis strain SRCM103689]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=339615 ES965_RS08700 WP_003220850.1 1659652..1660431(+) (codY) [Bacillus subtilis strain SRCM103689]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCGGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment