Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   ES963_RS08960 Genome accession   NZ_CP035390
Coordinates   1700481..1701260 (+) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM103641     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1695481..1706260
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ES963_RS08940 (ES963_08940) trmFO 1696174..1697481 (+) 1308 WP_003244725.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  ES963_RS08945 (ES963_08945) xerC 1697549..1698463 (+) 915 WP_003231988.1 tyrosine recombinase XerC -
  ES963_RS08950 (ES963_08950) clpQ 1698476..1699021 (+) 546 WP_046160401.1 ATP-dependent protease subunit ClpQ -
  ES963_RS08955 (ES963_08955) hslU 1699029..1700441 (+) 1413 WP_255220399.1 HslU--HslV peptidase ATPase subunit -
  ES963_RS08960 (ES963_08960) codY 1700481..1701260 (+) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  ES963_RS08965 (ES963_08965) flgB 1701640..1702029 (+) 390 WP_014479778.1 flagellar basal body rod protein FlgB -
  ES963_RS08970 (ES963_08970) flgC 1702029..1702481 (+) 453 WP_014479779.1 flagellar basal body rod protein FlgC -
  ES963_RS08975 (ES963_08975) fliE 1702492..1702812 (+) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  ES963_RS08980 (ES963_08980) fliF 1702858..1704468 (+) 1611 WP_046160402.1 flagellar basal-body MS-ring/collar protein FliF -
  ES963_RS08985 (ES963_08985) fliG 1704481..1705497 (+) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  ES963_RS08990 (ES963_08990) fliH 1705490..1706242 (+) 753 WP_014479782.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=339535 ES963_RS08960 WP_003220850.1 1700481..1701260(+) (codY) [Bacillus subtilis strain SRCM103641]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=339535 ES963_RS08960 WP_003220850.1 1700481..1701260(+) (codY) [Bacillus subtilis strain SRCM103641]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCAGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCAGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAGTATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGATCTGTTCCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCACGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCAGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAACGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCTTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467

Multiple sequence alignment