Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   EST43_RS07195 Genome accession   NZ_CP035309
Coordinates   1398551..1400944 (-) Length   797 a.a.
NCBI ID   WP_138071582.1    Uniprot ID   -
Organism   Macrococcoides canis strain KM0218     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1393551..1405944
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EST43_RS07175 (EST43_07170) - 1394612..1394923 (-) 312 WP_099482913.1 DUF1292 domain-containing protein -
  EST43_RS07180 (EST43_07175) ruvX 1394939..1395358 (-) 420 WP_138071578.1 Holliday junction resolvase RuvX -
  EST43_RS07185 (EST43_07180) - 1395351..1395596 (-) 246 WP_226997688.1 IreB family regulatory phosphoprotein -
  EST43_RS07190 (EST43_07185) alaS 1395676..1398300 (-) 2625 WP_138071580.1 alanine--tRNA ligase -
  EST43_RS07195 (EST43_07190) recD2 1398551..1400944 (-) 2394 WP_138071582.1 ATP-dependent RecD-like DNA helicase Machinery gene
  EST43_RS07200 (EST43_07195) - 1400947..1401606 (-) 660 WP_138071584.1 tetratricopeptide repeat protein -
  EST43_RS07205 (EST43_07200) mnmA 1401706..1402821 (-) 1116 WP_138071586.1 tRNA 2-thiouridine(34) synthase MnmA -
  EST43_RS07210 (EST43_07205) - 1402833..1403960 (-) 1128 WP_138071588.1 cysteine desulfurase family protein -
  EST43_RS07215 (EST43_07210) - 1404133..1405128 (+) 996 WP_138071590.1 LLM class flavin-dependent oxidoreductase -

Sequence

Protein


Download         Length: 797 a.a.        Molecular weight: 90145.42 Da        Isoelectric Point: 4.5846

>NTDB_id=339239 EST43_RS07195 WP_138071582.1 1398551..1400944(-) (recD2) [Macrococcoides canis strain KM0218]
MENMTLFEQSFVKGTITRILFYNNDNFYTVLKAEVIESNEDFDDDATITGYLPQIAEGDTYTFTGKIVTHPKYGKQLQAD
KFEKDMPQSRDGIIHYLSSDLFKGVGKKTARTIVEILGEDALNIILDDKSSLDRVPKLSDEKKDLIFNTIHDNQAIEKIM
IRLNEFGFGPQLAMKIYQFYKDDTLKVINESPYQLVMDIEGIGFNKADELAGKLGIDNNHPERLKAALVFTIEQASNQNG
HTYIPDQVLLETSFNLLTKNGSQVDPDRLVIALTELTEEHKLVEHEKNIYIPSLFYSETKAVQILHRLLNHKNKVKQFEQ
SEVLLAIGELESLFEVSYAERQKDALVTAMNSKLMILTGGPGTGKTTVVRGIVNLYAELHGLSLDYDDYDGQDYPIVVAA
PTGRASKRLQESTGLEATTIHRLIGWTRENKPDDVLETEITAKLVIIDEMSMVDTWLMFQLMKAVPNDAQIIFVGDQDQL
PSVGPGQVFKDMIDAQIMPQIELNEVYRQQEGSSIVELAHQIKRNEPFDITKRYNDRSFIPCSSSQIPEVIEKIVRSAVN
KGYDMRDIQVLAPIYRGPAGIRALNKVLQEILNPSDENKRELQFGDVYFRTGDKVLQLVNRPEDNVFNGDIGEVTGIFMA
AENALNKDVVIVDYDGSEVTYTKADLMEVTHAYCCSIHKSQGSEFPIVIMPVVNQYFRMLQKNILYTGLTRAKQSLIFCG
DVQAFNEGIKRIGNARFTSFYQFLIDYFKTDEADDTKHDNAGGNVLPFDVGEMTEDNMHLVDPMINMEGITPYDFIS

Nucleotide


Download         Length: 2394 bp        

>NTDB_id=339239 EST43_RS07195 WP_138071582.1 1398551..1400944(-) (recD2) [Macrococcoides canis strain KM0218]
TTGGAAAATATGACTTTGTTTGAGCAATCCTTTGTAAAAGGGACAATAACGAGAATATTATTTTATAACAATGATAATTT
CTATACTGTGCTGAAGGCAGAAGTGATTGAATCAAACGAAGATTTCGATGATGATGCTACGATTACAGGATACCTTCCGC
AAATTGCAGAAGGTGATACATATACTTTCACAGGTAAGATTGTAACGCATCCGAAGTACGGAAAGCAGTTACAGGCAGAT
AAGTTTGAGAAGGATATGCCGCAGTCTCGTGACGGTATTATTCATTATTTATCGAGTGATCTGTTTAAAGGGGTCGGTAA
GAAAACAGCGAGAACAATCGTAGAAATCCTGGGTGAAGATGCGCTAAATATTATTCTCGATGACAAAAGTAGTCTTGACA
GAGTCCCGAAGTTATCAGACGAGAAAAAAGATCTAATTTTTAATACGATACACGACAATCAGGCAATCGAGAAGATTATG
ATTCGTCTGAATGAATTTGGATTCGGTCCACAGCTTGCAATGAAAATCTATCAGTTCTATAAGGATGATACGCTGAAGGT
GATTAATGAATCACCATATCAACTCGTGATGGATATTGAAGGTATCGGATTTAATAAGGCGGATGAACTGGCAGGGAAAC
TCGGTATTGATAACAATCACCCCGAACGTCTGAAAGCAGCGCTCGTGTTTACGATAGAGCAAGCCTCTAATCAGAATGGT
CATACATATATTCCGGACCAGGTGTTACTTGAAACGAGCTTCAATCTACTGACGAAAAATGGCAGTCAAGTCGATCCAGA
CCGTCTCGTTATCGCACTCACTGAACTGACAGAGGAACATAAGCTCGTTGAACATGAGAAGAACATCTATATCCCGAGTC
TATTCTACTCTGAAACGAAAGCTGTACAAATATTGCATCGATTATTGAATCATAAGAACAAGGTGAAACAGTTCGAACAG
TCTGAAGTATTGCTGGCAATCGGGGAACTGGAGTCACTGTTCGAAGTGAGTTATGCAGAACGACAGAAAGATGCGCTTGT
AACGGCGATGAACAGTAAACTGATGATCTTAACGGGGGGACCAGGTACAGGAAAGACGACGGTTGTGCGCGGTATTGTGA
ATTTATATGCTGAACTGCATGGGTTAAGTCTAGATTATGATGACTATGATGGGCAGGACTATCCGATTGTTGTCGCAGCA
CCAACTGGTCGTGCATCGAAACGTCTTCAGGAGTCTACAGGACTTGAAGCGACAACAATACACAGGTTAATTGGCTGGAC
GAGAGAGAATAAACCCGATGATGTACTGGAAACGGAAATTACAGCGAAGCTTGTCATTATCGATGAAATGTCGATGGTTG
ATACGTGGCTCATGTTTCAGTTGATGAAAGCTGTGCCGAATGATGCACAGATTATCTTTGTCGGTGACCAGGACCAGCTG
CCATCCGTTGGACCAGGGCAAGTGTTCAAAGACATGATAGATGCACAAATTATGCCGCAGATTGAGCTGAATGAAGTGTA
CAGGCAGCAGGAAGGTTCATCAATCGTTGAACTTGCGCATCAAATTAAGCGTAATGAACCATTTGATATTACGAAACGTT
ATAATGACAGAAGCTTTATACCGTGCTCAAGCAGTCAAATACCAGAAGTGATCGAGAAGATCGTGCGCAGTGCTGTGAAT
AAAGGGTATGACATGCGTGATATACAAGTACTCGCACCGATATATAGAGGACCAGCGGGTATACGTGCGCTGAACAAAGT
GCTGCAGGAAATATTGAATCCAAGTGATGAAAACAAGCGTGAACTACAGTTTGGTGATGTTTATTTCAGGACAGGGGACA
AAGTGCTGCAGCTTGTCAATCGACCGGAAGACAATGTGTTTAACGGCGATATTGGTGAAGTGACAGGTATCTTTATGGCG
GCAGAGAACGCGCTGAATAAAGATGTTGTCATTGTGGATTATGATGGGAGTGAAGTGACGTATACGAAAGCGGATTTAAT
GGAAGTTACACATGCCTACTGCTGCTCCATTCATAAATCACAAGGTTCGGAATTTCCGATTGTCATTATGCCGGTTGTCA
ATCAATACTTCAGAATGCTGCAGAAGAATATACTCTATACCGGATTAACACGCGCGAAACAGTCACTTATTTTCTGTGGA
GATGTACAGGCGTTTAATGAAGGAATAAAGCGAATCGGTAACGCAAGGTTTACAAGCTTCTATCAGTTTCTTATCGATTA
TTTTAAGACAGATGAAGCAGATGATACAAAGCATGATAATGCAGGTGGTAACGTATTACCTTTCGACGTTGGTGAGATGA
CTGAAGACAATATGCATCTCGTTGATCCGATGATCAACATGGAAGGTATAACACCCTATGATTTTATAAGTTGA

Domains

Predicted by InterproScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(671-718)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(584-653)

AAA domain (AAA_30)

(338-543)

Helix-hairpin-helix containing domain (HHH_RecD2)

(153-243)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

51.801

100

0.523

Multiple sequence alignment