Detailed information NTG0339020

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: EQ030_RS05815
• Genome accession: NZ_CP035294
• Coordinates: 1188389..1190773 (+)
• Length: 794 a.a.
• NCBI ID: WP_011302967.1
• Uniprot ID: -
• Organism: Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1183389..1195773

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EQ030_RS05785 (EQ030_05790)	-	1183638..1183964 (+)	327	WP_011302963.1	ATP-binding cassette domain-containing protein	-
EQ030_RS05795 (EQ030_05800)	abc-f	1183971..1185269 (+)	1299	WP_346265959.1	ribosomal protection-like ABC-F family protein	-
EQ030_RS05800 (EQ030_05805)	-	1185330..1186472 (+)	1143	WP_002483116.1	cysteine desulfurase family protein	-
EQ030_RS05805 (EQ030_05810)	mnmA	1186473..1187585 (+)	1113	WP_011302965.1	tRNA 2-thiouridine(34) synthase MnmA	-
EQ030_RS05810 (EQ030_05815)	-	1187720..1188385 (+)	666	WP_011302966.1	tetratricopeptide repeat protein	-
EQ030_RS05815 (EQ030_05820)	recD2	1188389..1190773 (+)	2385	WP_011302967.1	ATP-dependent RecD-like DNA helicase	Machinery gene
EQ030_RS05820 (EQ030_05825)	alaS	1191121..1193751 (+)	2631	WP_011302968.1	alanine--tRNA ligase	-
EQ030_RS05825 (EQ030_05830)	-	1193821..1194081 (+)	261	WP_002483121.1	IreB family regulatory phosphoprotein	-
EQ030_RS05830 (EQ030_05835)	ruvX	1194085..1194513 (+)	429	WP_011302969.1	Holliday junction resolvase RuvX	-
EQ030_RS05835 (EQ030_05840)	-	1194530..1194862 (+)	333	WP_002483123.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 794 a.a.
• Molecular weight: 89458.11 Da
• Isoelectric Point: 4.5872

>NTDB_id=339020 EQ030_RS05815 WP_011302967.1 1188389..1190773(+) (recD2) [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305]
MGDPTLFNNSMIKGTVDAILFQNKENFYTVLKVDTIESSETFDSMPTIVGFFPEIAEGDVYTFKGQVVTHPKYGKQLKAE
TFEKELPQTKEAIISYLSSDLFKGIGKKTAQSIVNKLGENAINDILNDPSVLEQVPGLPKKKQKQIAEQIASNQETEQII
IRLHDLGFGPKLAMAIYQAYLGETLNVVENKPYQLVYDVKGIGFNKADTLARNVGIQFNDTERLKAGLLYVLEEECIKQG
HTYLPTQNVLEMTQDMLSQAPSEIIEMQQLNHVLQELVNDTKLIQQENEVAIPSLYYSELKSVQNLYRNYAYKNKLKQIE
QSDLLMKIGEIEERNQVNYANSQKDALQTAINSKIMLLTGGPGTGKTTVIKGIVELYAEIHGLSLNYDDYQNDDYPVVLG
APTGRASKRLAESTGLEAMTIHRLIGWNQDTQPEDILDNEISAKLIIIDEMSMVDTWLFHQFLSAVPIDAQIILVGDEDQ
LPSVGPGQVFKDLIDSKVIPRVNLTEVYRQQDGSSIIELAHRMKLGEPIDITQRFHDRNFINCNTDQIPTVVEKVVSSAV
NKGYDMSDIQVLAPMYKGSAGIKKLNMVLQDILNPKDKDTREIEFGDVFFRKGDKVLQLVNRPNDNIFNGDIGVIVGVFW
AKENALNKDVLVVDFEGNEITFVRQDLIELTHAYCTSIHKSQGSEFPIVIMPMVKQYFRMLQKPILYTGLTRAKQSLVFL
GDPQAFDIGLKTHGQVRMTQLCTFLKAYFNNDASTEEEISDTFDADIILTEDNIFKINPMINMGDISPYDFVED

Nucleotide

• Length: 2385 bp

>NTDB_id=339020 EQ030_RS05815 WP_011302967.1 1188389..1190773(+) (recD2) [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 = NCTC 7292 strain ATCC 15305]
ATGGGAGACCCTACACTATTTAATAATTCAATGATTAAAGGAACCGTTGATGCGATTTTATTTCAAAATAAAGAAAATTT
TTATACGGTTTTAAAAGTTGATACAATTGAGTCAAGTGAAACATTTGATTCAATGCCTACGATTGTAGGGTTTTTCCCAG
AAATTGCTGAAGGTGATGTTTATACATTCAAAGGCCAAGTTGTTACACATCCGAAGTATGGTAAACAACTTAAAGCTGAA
ACGTTTGAAAAAGAATTACCACAAACTAAAGAGGCAATTATTAGTTATTTATCAAGTGATTTATTTAAAGGTATTGGTAA
AAAAACTGCGCAAAGTATTGTTAATAAACTAGGTGAAAATGCTATAAACGATATCTTAAATGACCCGTCGGTATTAGAGC
AAGTACCTGGTTTACCTAAGAAAAAGCAAAAACAAATAGCTGAACAAATTGCTAGTAATCAAGAGACGGAGCAAATTATC
ATACGCTTACATGATTTAGGGTTTGGACCAAAACTAGCTATGGCGATTTACCAAGCGTATTTAGGAGAAACACTTAATGT
TGTTGAAAATAAACCCTACCAACTCGTATATGATGTAAAAGGAATTGGATTTAATAAAGCTGATACCTTAGCACGTAATG
TTGGAATCCAGTTCAATGATACAGAAAGACTAAAAGCGGGTTTGTTATATGTACTTGAAGAGGAATGTATTAAGCAAGGA
CATACATATTTACCTACTCAAAATGTATTAGAAATGACTCAAGATATGCTTTCTCAAGCACCTAGTGAAATAATAGAAAT
GCAACAATTGAATCATGTATTACAAGAATTGGTAAATGATACCAAACTCATTCAACAAGAAAATGAAGTTGCAATTCCGA
GTTTATATTATTCAGAATTAAAAAGTGTGCAGAATCTTTATCGCAATTATGCGTATAAGAATAAACTCAAACAAATAGAA
CAGTCTGATCTTTTAATGAAGATTGGAGAAATTGAAGAGCGCAATCAAGTTAATTATGCAAATTCACAAAAAGATGCGTT
ACAGACTGCTATTAATTCTAAAATTATGCTGCTCACAGGTGGCCCTGGTACAGGTAAAACAACTGTGATAAAAGGTATTG
TAGAATTATATGCAGAAATTCATGGTCTCTCATTAAATTATGATGATTATCAAAATGATGATTATCCAGTCGTATTAGGT
GCGCCTACAGGAAGAGCTTCAAAGCGTTTGGCAGAGTCGACAGGTTTAGAAGCCATGACAATTCATCGCTTAATCGGATG
GAATCAGGATACACAACCGGAAGATATTTTAGATAATGAAATATCAGCAAAATTAATTATCATTGATGAGATGTCTATGG
TTGATACTTGGCTGTTTCACCAATTTTTAAGTGCAGTTCCAATAGATGCACAAATCATTTTAGTAGGTGATGAAGATCAA
TTGCCTTCTGTAGGTCCTGGTCAAGTATTTAAAGATTTAATTGATTCAAAAGTGATACCTCGTGTTAATTTAACAGAAGT
TTATAGACAACAAGATGGTTCTAGTATTATTGAATTAGCGCATCGGATGAAACTAGGTGAACCGATTGATATAACCCAAC
GTTTTCATGATCGAAATTTTATAAATTGTAATACAGATCAGATTCCGACAGTTGTGGAAAAAGTTGTTTCAAGCGCTGTG
AATAAAGGCTATGATATGAGTGACATTCAAGTGCTTGCACCAATGTATAAAGGGTCAGCAGGCATTAAAAAACTTAATAT
GGTATTACAAGATATTTTAAATCCTAAGGATAAAGATACACGTGAAATAGAATTTGGTGATGTGTTTTTTAGAAAAGGTG
ACAAAGTCTTGCAACTTGTAAATAGGCCTAATGATAATATTTTCAACGGTGATATTGGTGTAATCGTGGGTGTTTTTTGG
GCAAAAGAAAATGCGTTGAACAAAGATGTATTAGTCGTTGATTTTGAAGGTAATGAAATTACTTTTGTTCGTCAAGATTT
AATAGAATTAACTCATGCTTATTGTACGTCGATCCATAAATCACAAGGTTCTGAATTCCCAATAGTCATCATGCCTATGG
TAAAACAATACTTTAGAATGCTACAAAAGCCCATATTATATACTGGCTTAACAAGGGCTAAACAATCCCTTGTCTTTTTA
GGTGATCCGCAAGCCTTTGATATTGGTTTAAAAACGCATGGACAAGTGAGAATGACACAGTTATGCACATTTTTAAAAGC
CTACTTTAATAACGATGCATCTACTGAAGAAGAAATCAGCGACACATTTGATGCTGATATCATTCTAACTGAAGACAATA
TTTTTAAAATTAACCCAATGATTAATATGGGAGATATTTCCCCATATGACTTCGTTGAAGATTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (339-545)

• Helix-hairpin-helix containing domain (HHH_RecD2) (153-243)

• Helix-hairpin-helix domain (HHH_5) (103-149)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (672-719)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (585-655)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	51.134	100	0.511