Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EQM13_RS09510 Genome accession   NZ_CP035282
Coordinates   1965226..1967061 (+) Length   611 a.a.
NCBI ID   WP_071138561.1    Uniprot ID   A0A1G4FHM8
Organism   Acidilutibacter cellobiosedens strain JN-28     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1960226..1972061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQM13_RS09495 (EQM13_09495) - 1960774..1962138 (-) 1365 WP_071138587.1 sigma-54-dependent Fis family transcriptional regulator -
  EQM13_RS09500 (EQM13_09500) - 1962356..1962976 (+) 621 WP_071138563.1 TetR family transcriptional regulator -
  EQM13_RS09505 (EQM13_09505) - 1962981..1965233 (+) 2253 WP_128752516.1 ABC transporter ATP-binding protein -
  EQM13_RS09510 (EQM13_09510) rcrQ 1965226..1967061 (+) 1836 WP_071138561.1 ABC transporter ATP-binding protein Regulator
  EQM13_RS09515 (EQM13_09515) - 1967153..1967398 (+) 246 WP_406565244.1 2-hydroxyacyl-CoA dehydratase -
  EQM13_RS09520 (EQM13_09520) - 1967478..1968569 (-) 1092 WP_071138559.1 dipeptide epimerase -
  EQM13_RS09525 (EQM13_09525) - 1968721..1969047 (-) 327 WP_071138558.1 DUF3870 domain-containing protein -
  EQM13_RS09530 (EQM13_09530) - 1969281..1971002 (+) 1722 WP_128752517.1 IS1634 family transposase -

Sequence

Protein


Download         Length: 611 a.a.        Molecular weight: 68044.34 Da        Isoelectric Point: 9.0591

>NTDB_id=338894 EQM13_RS09510 WP_071138561.1 1965226..1967061(+) (rcrQ) [Acidilutibacter cellobiosedens strain JN-28]
MSNQNKRYNKRPRNMMSSEKANDFKGTLKTLISYLSVYKVRIAFVIVFAIGSTVFSIVGPKILGNATTEIFNGLVSKISG
GKGIDFNKIGQILTMLIGLYIVSALFSYVQSFIMTDISQKFTYNLRKSLSEKIDKMPVGYFETQTHGEVLSRITNDVDTL
SQSLNQSLIQIITSFCSIIGSLVMMLSISWQMTLVAVLILPFSMAIISFVIKRSQGYFKQQQSHLGHVNGQVEEVYGGQN
IVKVFNGEDEAINSFSKENEQLYQSAWKSQFFSGIMQPIMSFVGNIGYVGVSILGGYLAIKGTITVGNIQSFIQYTRSFT
MPIGQIAQVSNMLQSAVASAERIFEFLSEKEEVQTVPNPVSINGLKGNVEFKNVNFGYTPDRTIINNFNANIKDGQTIAI
VGPTGAGKTTIVKLLMRFYDVNNGAILVDGHNIKDFNRRDLRKMFGMVLQDTWLFNGTIMDNIRYGRLDATDEEVIAAAK
AAYVHHFIQTLPEGYNMVLNEESTNISQGQKQLLTIARAILANPEILILDEATSSVDTRTELRIQKAMQNLMKGRTTFAI
AHRLSTIRDADLILVMNNGDIVEQGTHEQLLKANGFYTSIYNSQFESAEVI

Nucleotide


Download         Length: 1836 bp        

>NTDB_id=338894 EQM13_RS09510 WP_071138561.1 1965226..1967061(+) (rcrQ) [Acidilutibacter cellobiosedens strain JN-28]
ATGAGTAATCAAAATAAACGTTATAATAAACGTCCCAGAAATATGATGAGCAGTGAAAAAGCTAATGATTTCAAAGGTAC
TTTGAAAACTTTGATTTCTTACTTATCAGTATACAAAGTCAGAATTGCCTTTGTCATTGTATTTGCAATAGGAAGCACTG
TATTTTCCATTGTCGGTCCTAAAATTTTAGGTAATGCCACCACGGAAATCTTTAATGGACTTGTAAGTAAAATTTCAGGA
GGCAAAGGAATCGATTTTAATAAAATCGGACAGATTTTAACGATGCTTATAGGATTATATATAGTTAGTGCACTTTTTTC
CTATGTCCAGAGCTTTATCATGACAGACATCTCTCAAAAATTCACTTATAATCTCCGTAAAAGTTTATCGGAAAAGATTG
ATAAGATGCCCGTAGGTTATTTTGAGACTCAAACCCATGGTGAAGTTTTATCTAGGATTACAAACGATGTTGATACTTTG
AGCCAAAGTTTAAATCAAAGTTTAATTCAGATTATCACATCCTTTTGTTCAATTATCGGATCATTAGTAATGATGTTGTC
TATCAGTTGGCAAATGACTTTAGTCGCTGTTCTGATCCTGCCATTTTCAATGGCTATTATAAGTTTCGTCATTAAAAGAT
CCCAGGGATATTTTAAACAGCAGCAAAGTCATTTAGGCCATGTAAACGGTCAAGTAGAAGAAGTCTACGGAGGGCAAAAT
ATCGTCAAAGTATTTAACGGAGAAGATGAAGCTATCAATAGCTTTTCAAAAGAAAACGAACAGTTGTATCAATCAGCATG
GAAATCCCAATTTTTCTCCGGAATAATGCAGCCAATCATGTCTTTTGTAGGTAATATCGGATATGTGGGAGTATCAATTC
TTGGAGGATATTTAGCAATTAAGGGAACTATTACAGTAGGTAATATCCAATCCTTTATTCAATATACCAGAAGTTTCACA
ATGCCTATCGGACAAATTGCTCAGGTATCAAATATGTTACAATCGGCAGTTGCCTCTGCAGAAAGAATATTTGAATTTTT
ATCCGAAAAAGAAGAGGTACAGACAGTTCCTAATCCTGTATCAATTAACGGGCTGAAAGGAAATGTGGAATTTAAAAACG
TCAACTTCGGATATACACCGGATCGTACTATTATCAACAACTTCAATGCTAATATAAAAGACGGGCAGACTATTGCAATT
GTTGGTCCTACAGGCGCCGGAAAAACTACAATAGTGAAACTCCTTATGCGGTTTTATGATGTGAACAATGGGGCTATTTT
AGTAGACGGCCATAATATAAAGGACTTTAACAGAAGGGATCTTCGTAAAATGTTTGGCATGGTATTACAGGATACCTGGT
TGTTTAACGGCACAATAATGGATAATATCCGTTACGGAAGATTAGATGCTACCGACGAAGAAGTAATTGCTGCCGCTAAA
GCTGCCTATGTCCATCATTTTATACAAACCTTGCCAGAAGGTTATAATATGGTGCTTAACGAGGAATCAACCAATATTTC
TCAAGGTCAGAAACAATTGTTAACTATAGCTCGTGCTATCCTGGCAAACCCTGAAATTTTAATCTTGGATGAGGCAACCA
GTTCGGTAGATACTCGTACAGAACTGAGGATTCAAAAAGCAATGCAAAATCTCATGAAGGGCAGGACTACATTTGCTATT
GCCCATAGACTGTCAACGATTAGGGACGCGGATTTGATTTTGGTAATGAATAACGGTGATATTGTGGAACAAGGTACTCA
TGAACAGCTATTAAAGGCCAACGGATTCTACACCAGCATTTATAATTCTCAATTTGAAAGTGCTGAGGTTATTTAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(386-534)

ABC transporter transmembrane region (ABC_membrane)

(43-322)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1G4FHM8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

51.111

95.745

0.489

Multiple sequence alignment