Detailed information    

insolico Bioinformatically predicted

Overview

Name   crp   Type   Regulator
Locus tag   MDS_RS22005 Genome accession   NC_015410
Coordinates   4735610..4736254 (+) Length   214 a.a.
NCBI ID   WP_013717374.1    Uniprot ID   A0ABN4IPU6
Organism   Ectopseudomonas mendocina NK-01     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 4730610..4741254
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  MDS_RS21980 (MDS_4323) - 4730969..4731766 (+) 798 WP_013717370.1 SDR family oxidoreductase -
  MDS_RS21985 (MDS_4322) - 4731753..4733234 (-) 1482 WP_041769821.1 AAA family ATPase -
  MDS_RS21990 (MDS_4324) - 4733357..4734196 (+) 840 WP_013717372.1 formylglycine-generating enzyme family protein -
  MDS_RS21995 (MDS_4325) coq7 4734258..4734905 (+) 648 WP_013717373.1 2-polyprenyl-3-methyl-6-methoxy-1,4-benzoquinone monooxygenase -
  MDS_RS22000 (MDS_4326) - 4734952..4735374 (-) 423 WP_003463479.1 OsmC family protein -
  MDS_RS22005 (MDS_4327) crp 4735610..4736254 (+) 645 WP_013717374.1 cAMP-activated global transcriptional regulator CRP Regulator
  MDS_RS22010 (MDS_4328) trpC 4736303..4737142 (-) 840 WP_013717375.1 indole-3-glycerol phosphate synthase TrpC -
  MDS_RS22015 (MDS_4329) trpD 4737139..4738185 (-) 1047 WP_013717376.1 anthranilate phosphoribosyltransferase -
  MDS_RS22020 (MDS_4330) - 4738182..4738778 (-) 597 WP_013717377.1 aminodeoxychorismate/anthranilate synthase component II -
  MDS_RS22025 (MDS_4331) trpE 4738792..4740282 (-) 1491 WP_013717378.1 anthranilate synthase component I -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24160.08 Da        Isoelectric Point: 8.3454

>NTDB_id=33840 MDS_RS22005 WP_013717374.1 4735610..4736254(+) (crp) [Ectopseudomonas mendocina NK-01]
MVAITLTPKIKNLDKLLAHCHRRRYTAKSTIIYAGDRCETLFFIVKGSVTILIEDDDGREMIIAYLNAGDFFGEMGLFEK
EGTEKERSAWVRAKTECEVAEISYAKFRELTQQDPDILFALGSQMAERLRNTTRKVGDLAFLDVTGRVARTLLDLCKQPD
AMTHPDGMQIKITRQEIGRIVGCSREMVGRVLKSLEEQGLVHVKGKTMVVFGTR

Nucleotide


Download         Length: 645 bp        

>NTDB_id=33840 MDS_RS22005 WP_013717374.1 4735610..4736254(+) (crp) [Ectopseudomonas mendocina NK-01]
ATGGTTGCTATTACCCTTACACCTAAAATCAAGAATCTCGACAAGCTTCTCGCGCACTGTCACCGCCGTCGCTACACCGC
CAAGAGCACGATCATCTACGCAGGTGATCGCTGCGAAACACTCTTCTTCATCGTCAAAGGCTCGGTCACCATCCTTATCG
AGGATGACGACGGCCGTGAAATGATCATCGCCTACCTCAATGCCGGCGATTTCTTCGGCGAGATGGGCTTGTTCGAAAAG
GAAGGCACGGAGAAGGAGCGCAGCGCCTGGGTTCGCGCCAAGACCGAGTGCGAGGTCGCGGAAATCAGCTACGCCAAATT
CCGCGAGCTGACCCAGCAGGATCCGGACATCCTGTTCGCCCTGGGCAGCCAGATGGCCGAGCGCCTGCGCAATACCACGC
GCAAGGTCGGCGATCTGGCTTTCCTCGATGTGACTGGCCGCGTCGCACGCACCCTGCTCGACCTGTGCAAGCAGCCGGAC
GCCATGACTCACCCGGATGGCATGCAGATCAAGATCACTCGCCAGGAAATCGGCCGCATCGTTGGCTGCTCACGTGAGAT
GGTCGGCCGCGTGCTCAAGTCCCTGGAGGAACAGGGCCTGGTGCACGTCAAAGGCAAGACCATGGTGGTCTTCGGCACCC
GCTGA

Domains

Predicted by InterProScan.

Crp-like helix-turn-helix domain (HTH_Crp_2)

(146-209)

Cyclic nucleotide-binding domain (cNMP_binding)

(22-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  crp Vibrio cholerae strain A1552

67.98

94.86

0.645
  crp Haemophilus influenzae Rd KW20

61.386

94.393

0.579
  crp Acinetobacter baumannii D1279779

55.172

94.86

0.523

Multiple sequence alignment