Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   F0316_RS10795 Genome accession   NZ_CP043554
Coordinates   2333737..2334720 (+) Length   327 a.a.
NCBI ID   WP_000211036.1    Uniprot ID   A0AAX1QPY5
Organism   Vibrio cholerae strain RFB16     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2328737..2339720
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  F0316_RS10780 (F0316_10780) - 2329880..2331550 (+) 1671 WP_000880698.1 ABC transporter substrate-binding protein -
  F0316_RS10785 (F0316_10785) - 2331720..2332706 (+) 987 WP_000540337.1 ABC transporter permease -
  F0316_RS10790 (F0316_10790) - 2332709..2333734 (+) 1026 WP_000646270.1 ABC transporter permease -
  F0316_RS10795 (F0316_10795) amiE 2333737..2334720 (+) 984 WP_000211036.1 ABC transporter ATP-binding protein Regulator
  F0316_RS10800 (F0316_10800) - 2334763..2335758 (+) 996 WP_054104358.1 ABC transporter ATP-binding protein -
  F0316_RS10805 (F0316_10805) - 2335815..2337539 (+) 1725 WP_000925608.1 glycoside hydrolase family 9 protein -
  F0316_RS10810 (F0316_10810) - 2337536..2338420 (+) 885 WP_001110421.1 N-acetylglucosamine kinase -

Sequence

Protein


Download         Length: 327 a.a.        Molecular weight: 36684.50 Da        Isoelectric Point: 6.9407

>NTDB_id=338396 F0316_RS10795 WP_000211036.1 2333737..2334720(+) (amiE) [Vibrio cholerae strain RFB16]
MTTPLISIRNLCVDYITDAGDVRACNNVSFDLAPGEVFGLAGESGCGKSTVAFSLMRLHKPPAFITGGEVIFNGEDILKY
SDERMQAFRWKEMSMVFQSAMNALNPVLTMEEQFCDVIMRHTNMTREQAKRRAEGLLEIVDIHPSRLNDYPHQFSGGMRQ
RLVIAIALALNPKMIIMDEPTTALDVVVQREILQKIYALKEEFGFSILFITHDLSLMVEFSDRIGIMYSGELIEVAPSKQ
ILETPYHPYTKGLGSSFPPLTGPKTKLTGIPGNPLNLLDIPQGCRFQARCDRVHEACTKVPTVLRQIEHGRFSNCHLYTQ
SNATIKR

Nucleotide


Download         Length: 984 bp        

>NTDB_id=338396 F0316_RS10795 WP_000211036.1 2333737..2334720(+) (amiE) [Vibrio cholerae strain RFB16]
ATGACTACGCCATTAATCTCAATCCGCAACTTATGCGTGGACTACATTACCGATGCTGGCGATGTCCGTGCCTGTAACAA
TGTGAGCTTCGATTTAGCCCCAGGCGAGGTGTTTGGCCTTGCGGGTGAATCCGGTTGTGGTAAATCCACCGTTGCCTTCT
CGCTGATGCGCCTGCATAAGCCGCCCGCGTTCATCACTGGTGGCGAGGTGATCTTCAACGGTGAAGACATCCTGAAGTAC
AGTGATGAGCGCATGCAAGCGTTCCGTTGGAAAGAAATGTCGATGGTATTTCAAAGTGCGATGAACGCGCTGAACCCAGT
TCTGACCATGGAAGAGCAATTTTGCGATGTGATCATGCGCCATACCAATATGACGCGTGAACAAGCCAAACGTCGTGCTG
AAGGGCTGTTAGAAATTGTGGATATTCACCCAAGCCGTCTTAACGATTATCCGCACCAGTTCTCGGGTGGTATGCGTCAA
CGCTTGGTGATTGCGATTGCGCTCGCGCTCAATCCAAAAATGATCATTATGGATGAACCTACGACCGCGCTAGATGTTGT
CGTTCAGCGTGAAATTCTGCAGAAGATCTACGCACTCAAAGAAGAGTTTGGTTTCTCTATTCTGTTCATTACTCATGACT
TGTCACTGATGGTCGAGTTCTCAGACCGTATCGGCATCATGTACTCCGGTGAATTGATTGAAGTGGCTCCTTCAAAACAA
ATTCTGGAAACCCCTTACCACCCTTATACCAAAGGGTTGGGAAGTTCTTTTCCACCATTAACTGGACCAAAAACAAAACT
CACAGGGATCCCTGGAAACCCACTCAACCTGTTGGACATTCCTCAAGGTTGCCGTTTCCAAGCTCGCTGTGACCGAGTTC
ATGAAGCTTGTACTAAGGTACCGACCGTACTGCGCCAAATCGAGCATGGCCGCTTTTCTAACTGCCATCTCTATACGCAA
TCGAACGCCACTATAAAACGCTAA

Domains

Predicted by InterProScan.

Oligopeptide/dipeptide transporter, C-terminal region (oligo_HPY)

(233-297)

ABC transporter (ABC_tran)

(26-181)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAX1QPY5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

40.69

88.685

0.361
  amiE Streptococcus thermophilus LMD-9

40.69

88.685

0.361

Multiple sequence alignment