Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EQH26_RS11115 Genome accession   NZ_CP035254
Coordinates   1850094..1851125 (-) Length   343 a.a.
NCBI ID   WP_000506424.1    Uniprot ID   A0A0B7LYB2
Organism   Streptococcus pneumoniae strain TVO_1901932     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1845094..1856125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EQH26_RS09410 (EQH26_09920) - 1845240..1846001 (-) 762 WP_001107772.1 SDR family NAD(P)-dependent oxidoreductase -
  EQH26_RS09415 (EQH26_09925) ytpR 1846034..1846660 (-) 627 WP_000578310.1 YtpR family tRNA-binding protein -
  EQH26_RS09420 (EQH26_09930) - 1846676..1846993 (-) 318 WP_000615767.1 thioredoxin family protein -
  EQH26_RS09425 (EQH26_09935) - 1846990..1847289 (-) 300 WP_001013974.1 DUF4651 domain-containing protein -
  EQH26_RS11045 - 1847487..1847684 (-) 198 Protein_1855 N-acetylmuramoyl-L-alanine amidase family protein -
  EQH26_RS09440 (EQH26_09950) - 1847926..1848600 (-) 675 WP_000725749.1 LiaF transmembrane domain-containing protein -
  EQH26_RS09445 (EQH26_09955) - 1848606..1849052 (-) 447 WP_000776589.1 LytTR family DNA-binding domain-containing protein -
  EQH26_RS09450 (EQH26_09960) - 1849166..1849669 (-) 504 WP_000800924.1 phosphatase PAP2 family protein -
  EQH26_RS09455 (EQH26_09965) - 1849666..1850028 (-) 363 WP_000078805.1 DUF2200 domain-containing protein -
  EQH26_RS11115 rcrQ 1850094..1851125 (-) 1032 WP_000506424.1 ABC transporter ATP-binding protein Regulator
  EQH26_RS11120 - 1851132..1851953 (-) 822 Protein_1861 ABC transporter permease -
  EQH26_RS09470 (EQH26_09975) - 1851970..1852441 (-) 472 Protein_1862 MarR family winged helix-turn-helix transcriptional regulator -
  EQH26_RS09475 (EQH26_09985) - 1852565..1853281 (-) 717 WP_000532876.1 YebC/PmpR family DNA-binding transcriptional regulator -
  EQH26_RS09480 (EQH26_09995) ply 1854162..1855577 (-) 1416 WP_001284361.1 cholesterol-dependent cytolysin pneumolysin -
  EQH26_RS09485 (EQH26_10000) - 1855588..1855998 (-) 411 WP_000595758.1 hypothetical protein -

Sequence

Protein


Download         Length: 343 a.a.        Molecular weight: 37918.12 Da        Isoelectric Point: 4.4764

>NTDB_id=337962 EQH26_RS11115 WP_000506424.1 1850094..1851125(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901932]
MGFLLMGALFIVLPRTMVSAKRINQVLDLHSSIQNPVQVQLTDENFKGQVEFKDVTFRYAANSEAVIEHVSFKAETGQTV
AFIGSTGSGKSTLVNLIPRFYDVSAGEILVDGVNVQDYDFSATAHAGQKVAIVGPTGTGKTTIVNLLMKFYEIDKGSIHI
DGVDTKAMTRSEVHDAFSMVLQDTWLFEGTIRDNLIYNQIGISDERMMEASKAVGIHHFIMTLPDGYDTILDDTVTLSVG
QKQLLTIARALLKDAPLLILDEATSSVDTRTEELIQKAMDRLMEGRTSFVIAHRLSTIRNADLILVMKDGNIIEQGNYEE
LMAQGGFYADLYNSQFTEDEAEE

Nucleotide


Download         Length: 1032 bp        

>NTDB_id=337962 EQH26_RS11115 WP_000506424.1 1850094..1851125(-) (rcrQ) [Streptococcus pneumoniae strain TVO_1901932]
ATGGGCTTCCTTCTCATGGGAGCACTCTTCATCGTTCTTCCCCGAACTATGGTCTCTGCTAAGCGGATTAATCAAGTTTT
AGATTTGCATTCTTCTATCCAAAACCCTGTTCAAGTGCAGCTGACTGATGAAAACTTCAAAGGTCAGGTCGAGTTTAAGG
ATGTGACCTTCCGCTATGCGGCAAATTCGGAGGCAGTTATTGAACATGTTAGCTTTAAAGCAGAAACTGGTCAAACAGTG
GCCTTTATTGGGTCAACAGGTTCTGGTAAATCAACTCTGGTCAATCTGATTCCACGTTTCTACGACGTGTCAGCAGGAGA
AATTCTGGTGGACGGTGTCAATGTTCAAGACTATGACTTCTCTGCGACAGCTCATGCTGGTCAAAAGGTTGCCATTGTTG
GGCCGACTGGGACTGGTAAGACAACCATTGTCAATCTTTTGATGAAATTCTATGAGATTGATAAGGGAAGTATTCACATT
GATGGTGTGGATACCAAGGCTATGACGCGTTCAGAAGTGCATGATGCCTTTTCAATGGTCTTGCAGGATACCTGGCTCTT
TGAAGGAACTATTCGAGACAATCTCATCTATAATCAAATAGGGATTAGTGATGAACGAATGATGGAAGCTAGTAAGGCTG
TGGGAATTCACCACTTTATTATGACCTTGCCAGATGGCTATGATACCATCTTGGATGACACCGTGACCTTGTCTGTAGGA
CAAAAACAACTATTGACTATTGCTCGTGCCCTTCTTAAGGATGCACCGCTTTTGATTTTGGATGAGGCGACTTCTTCTGT
TGACACACGGACAGAGGAATTGATCCAAAAAGCCATGGACCGTTTGATGGAAGGACGCACATCCTTTGTCATTGCCCACC
GCTTGTCAACCATCCGAAATGCAGACTTGATCTTGGTCATGAAAGATGGAAATATCATCGAGCAAGGCAACTATGAGGAA
CTGATGGCGCAAGGTGGCTTCTACGCTGACTTGTACAATAGTCAATTTACAGAAGATGAAGCAGAAGAATAA

Domains

Predicted by InterproScan.

ABC transporter (ABC_tran)

(120-265)

ABC transporter (ABC_tran)

(68-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0B7LYB2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

80.804

65.306

0.528
  rcrP Streptococcus mutans UA159

37.861

100

0.382

Multiple sequence alignment